Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq15 233 3e-55
seq5 163 4e-34
seq6 102 1e-15
>seq15
Length=702288
Score = 233 bits (258), Expect = 3e-55
Identities = 225/289 (78%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
||||||| ||| || || || ||| |||| |||||||| || |||||||||||||
Sbjct 565636 CATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACGCCGCA 565695
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
||||||| ||||||||||| || | ||||||| ||| |||||||||||||||||
Sbjct 565696 CCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGGCATCTA 565755
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
|||||||||||| ||||||||||||||||||| |||| ||||||||||| | |
Sbjct 565756 CGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCTCTCGAT 565815
Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133
||||| | ||||| | || | ||| | || ||||| |||||| | || |||||| |
Sbjct 565816 CCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAACGGCAT 565875
Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
| |||||||| ||||| | ||| |||||||||||||||||||||||
Sbjct 565876 CATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAG 565924
Score = 154 bits (170), Expect = 2e-31
Identities = 370/548 (68%), Gaps = 30/548 (5%)
Strand=Plus/Plus
Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938
|||||||||| || || || | | || ||||| ||| | ||||||||| |||
Sbjct 566943 TGGGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCG---CTC 566999
Query 262939 GTG---GCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995
||| |||| ||||| || ||| |||| |||||||| ||| || ||||||||||
Sbjct 567000 GTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTC 567059
Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055
||| |||| |||||||||||| |||||||| ||| | ||||| || || |||
Sbjct 567060 GAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTCCAGGTCGTC 567119
Query 263056 AACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGA-CGCC-CGACTTTCGC 263112
|||| | || || ||| | | || | ||||||||||||| || | ||| |
Sbjct 567120 AACCCCTGGCTCCTCC-GCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGA--TGAAG 567176
Query 263113 GACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171
|| | |||| ||| |||| |||||| | ||| | | || | | ||
Sbjct 567177 AACACGATCATCGCG-CACAACGGCTCGATCCAGAACGTCCCCGGCA------TCCCCGA 567229
Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231
||| |||||| ||| |||||||||||||||| | | | ||| ||| || |
Sbjct 567230 CGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGACCT 567289
Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC----- 263286
|| |||||||||| | | |||||||| |||||||||||| | |||||
Sbjct 567290 CGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTC 567349
Query 263287 GCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346
||||||| | ||| || |||||||||||||| ||| | ||| || |||
Sbjct 567350 GCCGACC--ATGGCGCAGC---TCACGTCGATGCACTTCTACGGATGGAAGAAAGGTCTC 567404
Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406
||||| ||||||||||| || |||||||| | || | | |||||| | |||||||||
Sbjct 567405 AAGACGGGCATGTACTACCTCCGCACCCGCGCTGCCGTCGGCGCCATCAAGTTCACCGTC 567464
Query 263407 GATCAGGC 263414
|| |||||
Sbjct 567465 GACCAGGC 567472
Score = 125 bits (138), Expect = 1e-22
Identities = 256/383 (67%), Gaps = 16/383 (4%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| |||||| || ||| |||||| || ||||||||||||||| ||
Sbjct 565925 GGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATC 565984
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| | | || |||||| ||||||||||||| ||| |||| || ||||||||
Sbjct 565985 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCGCGC 566038
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965
|| | || | | ||| |||| |||||| || || | || || || | | |
Sbjct 566039 GACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 566096
Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025
|||||||| | ||||| |||||| ||||||||||||| || ||||| ||| |||| |
Sbjct 566097 GCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACG 566156
Query 262026 CCTTTGACGCCCTCTATG---AGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGC 262082
|| | | |||| || || ||| ||| || |
Sbjct 566157 AGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATC---C 566213
Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142
|||| | || |||||| ||| | ||| |||||| ||||||| |||| |||| ||
Sbjct 566214 CCGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 566273
Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165
|| |||||||||| |||| ||||
Sbjct 566274 TGCTCTACAAGGATGCCGCCAAC 566296
Score = 118 bits (130), Expect = 2e-20
Identities = 199/278 (72%), Gaps = 15/278 (5%)
Strand=Plus/Plus
Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGT----CAACAAGC-CGTCGACCGACGT-G 1456513
||||||||||| || |||| | || |||| | || ||| | || |||| ||| |
Sbjct 258425 GACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCCGACCAGCGCCTC-ACCG-CGTCG 258482
Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573
||||| ||||||| ||| ||||||||||||||| | || || | | || | ||
Sbjct 258483 CCCAA----ATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTG 258538
Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633
|| || | | |||||||||||||| ||| |||||| | |||||||| | | || ||||
Sbjct 258539 CCCGTCGGCTTGATCGGCATGAACGCGACC-CTCATGCGACAGTACATCG-AGTTCGTCG 258596
Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693
| ||||| |||| | ||||| || | ||||||| ||| | | |||||||||
Sbjct 258597 CGGACCGATTGCTTGTCGCGCTTGGGAAC-GAGAAGCTGTACAATGCCGAGAACCCGTTC 258655
Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731
| |||||| |||||||| | ||||||||||||||
Sbjct 258656 GACTTTATGGAGATGATCTCGATGGAGGGCAAGACCAA 258693
>seq5
Length=1666694
Score = 163 bits (180), Expect = 4e-34
Identities = 213/287 (74%), Gaps = 7/287 (2%)
Strand=Plus/Minus
Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506
|||| | ||| ||||||||||| || |||| | || |||| | ||| || |
Sbjct 1125250 AGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCC-GCCCTCACC 1125192
Query 1456507 C-GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565
| ||| | | ||| |||||| |||||| |||||||||||| ||||||| ||| |
Sbjct 1125191 CCGACACGGTCGAGCGCATCATCCGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGG 1125132
Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGA 1456624
|| ||||||| || |||||||||||||||| || || ||||||||||||||||| |
Sbjct 1125131 AGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG- 1125075
Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684
| ||||| ||||||||| |||| | || || ||| | |||||| ||||| | ||
Sbjct 1125074 AGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAAC-GAGAAGATCTACCACAAGGAG 1125016
Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731
||||||||| | |||||| |||||||| | ||||||||||||||
Sbjct 1125015 AACCCGTTCGACTTCATGGAGATGATCTCGATGGAGGGCAAGACCAA 1124969
Score = 138 bits (152), Expect = 2e-26
Identities = 250/359 (70%), Gaps = 15/359 (4%)
Strand=Plus/Minus
Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190
||||||||| ||||||||||| || ||| || | | || ||| |||||||||||
Sbjct 1606275 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAATCCTCCTGGTT 1606216
Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247
|||| | || || || |||||| ||| || ||||| || |||| || || ||
Sbjct 1606215 GTAGCCGGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 1606157
Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304
| || || |||||| | | ||| | | || ||| ||||||||| | |||
Sbjct 1606156 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 1606099
Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361
|| | || |||||| ||| | |||| | | |||| | || | | | || |||
Sbjct 1606098 GTTGGCCATCGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACACC--CATAGC-CTG 1606042
Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421
|||||||||||| | ||||||| |||||||||| | ||||||||||| || || |||||
Sbjct 1606041 CTTGCCCATGGCAGACTGGTAGGTGTTGCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 1605982
Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480
||||||||||||| ||| || || | ||||||| |||| |||||| ||| ||
Sbjct 1605981 GATGGACGCGCAGATGCCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 1605923
Score = 105 bits (116), Expect = 1e-16
Identities = 120/156 (77%), Gaps = 5/156 (3%)
Strand=Plus/Minus
Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181
||| |||||||| |||||| | | |||||| | || || || | || | ||||
Sbjct 1125533 GAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGACGACCGCTCCGTC--TTCGGCGAG 1125476
Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239
|| ||||||| || ||||| |||||||||||||| ||||| ||| ||| ||| ||||
Sbjct 1125475 CGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCAT 1125417
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||||||| | |||||||| ||
Sbjct 1125416 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 1125381
Score = 91.5 bits (100), Expect = 2e-12
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935
|||| || || || || || || | | |||||| | | | |||| |||||| |||
Sbjct 950203 CGCAAAATCGCGCACCGACTTTGAATCGGCTCGATAATCTTGTTCGACTGGTTGCAAGCC 950262
Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995
|| || ||||||||||| ||| | | ||||| || |||||||| ||||| ||
Sbjct 950263 AGCGCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGGAGGGCTTGTTGTGCG 950322
Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCA 333053
| | ||| | ||||||| |||||||||||||||| ||||||||| || | ||||
Sbjct 950323 CCAGTCGTCATCGAGTCGGCTTCGTCGAGGATGATGAGCTTGTGGCGGCCAAGAGGCA 950380
>seq6
Length=1546759
Score = 102 bits (112), Expect = 1e-15
Identities = 192/281 (68%), Gaps = 1/281 (0%)
Strand=Plus/Plus
Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556
|| |||| ||||||||||||||||||||| | | || | || ||| | |||
Sbjct 256249 CCCATGACGGGCTTGTTGGCCTGCGGCGAGATAATGTTTCGCGCGACGGCGGCGATGTTG 256308
Query 1817557 GTCACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615
||| ||| | || | || || ||||| || || || | |||||||||||||||||||
Sbjct 256309 ATCAGCTCCGACCGAGTCTCCTCTGACTGCGGGACGTGCAAGTTCATCTCGTCGCCGTCA 256368
Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675
|||||||| ||||| | ||||| | ||||||| || | ||| | ||||||
Sbjct 256369 AAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGGTCGAGTACGGCATG 256428
Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735
|| || |||| | ||| || | |||| | || ||||||||||| | ||
Sbjct 256429 AGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACGGCTGCCGGTTGAACAGG 256488
Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776
||| ||||||| | ||||| |||||||| |||| ||
Sbjct 256489 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACAATCCAGCC 256529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808306444860
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