Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq15 125 7e-24 seq13 91.5 1e-13 seq1 89.7 5e-13 >seq3 Length=1857496 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560 |||||| || || || || || ||||| || ||||||||||||| | ||| || ||| Sbjct 877582 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 877523 Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620 || ||||| ||||| || || ||||| |||||||| ||||| || || || || || || Sbjct 877522 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTC 877463 Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGT 134680 ||||| || ||||| ||| | ||||| || || || || ||||| || ||||| Sbjct 877462 CTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGT 877403 Query 134681 TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| | || || ||||| || ||||| Sbjct 877402 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 877370 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| |||| ||||||||| || || || || || || || || || || | Sbjct 877891 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 877832 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| |||||||| || || || || ||||| ||||| || ||||| || Sbjct 877831 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 877772 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | ||||||||||| || || Sbjct 877771 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 877712 Query 134667 TCGAGAGTAAT 134677 |||||||| || Sbjct 877711 TCGAGAGTGAT 877701 >seq15 Length=702288 Score = 125 bits (138), Expect = 7e-24 Identities = 288/425 (68%), Gaps = 9/425 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| ||||||| ||||| ||||| |||||||| ||||||||| ||| | Sbjct 565562 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATC 565621 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| | | ||||||||||| ||||| || | || | Sbjct 565622 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 565681 Query 7684 GCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| ||| || || | || ||||| || | | || ||| || ||| Sbjct 565682 GCCGGCAC-GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTC 565740 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGC 7800 ||||| ||||| ||| ||||||| | || ||||| || ||| || ||||| ||| Sbjct 565741 GATCGAGGGCATCTACGACACGCT-CAAGACGTGCGCGCTCATCTCC-AAGACGGCAGGC 565798 Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAAC 7860 || || || || | || || | ||||| | |||| ||||| ||| ||| Sbjct 565799 GGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAAC 565858 Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920 || | | | ||| | |||||| | ||||||| ||| ||| ||| ||| | || Sbjct 565859 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 565918 Query 7921 GACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 |||||||| || |||||| ||||| |||||||| | |||||||||||||| Sbjct 565919 GACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 565978 Query 7978 GACAT 7982 ||||| Sbjct 565979 GACAT 565983 >seq13 Length=784862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| | |||| | ||| ||| Sbjct 701475 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 701534 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | |||||||| || || || ||||| || || || || Sbjct 701535 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 701594 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || ||||| ||| | ||||| ||||| || || ||||| || || Sbjct 701595 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 701647 >seq1 Length=2216040 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | |||||||| || || || ||||| || ||||||||| Sbjct 892464 GCCATGCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAG 892405 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 || || ||| | ||| |||||||| ||||| || || |||| |||||||| ||| Sbjct 892404 TCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCG 892345 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| || || || || || || Sbjct 892344 GGGGGGATGCCCTCCTTGTCCTGGATCTT 892316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398210475600