Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15 143 3e-29 seq2 91.5 2e-13 >seq15 Length=702288 Score = 143 bits (158), Expect = 3e-29 Identities = 485/746 (65%), Gaps = 17/746 (2%) Strand=Plus/Minus Query 111348 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAA 111407 ||||| |||||||||||||||||| |||| | |||||||| ||| | | ||| | Sbjct 566297 TGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGA 566238 Query 111408 TAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTAC 111466 || | ||| | | || | ||| || | || ||||| || |||||| ||||||| Sbjct 566237 CGGCGTACCAGAGCTTCTG-GGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTAC 566179 Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 ||| |||| | | ||||| || || | ||| |||||| || |||| | | Sbjct 566178 TTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCC 566119 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || ||||| || | ||| | || | ||| || |||| |||||| ||||| || ||| Sbjct 566118 GGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATC 566059 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || |||| | || | || | || |||| || | || ||||| || | Sbjct 566058 CAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 565999 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706 || |||||||| | ||| || |||||||| ||||| || |||| |||| | ||| Sbjct 565998 TCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC--- 565942 Query 111707 CGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 | ||| || | || | || |||||||| ||| ||| | ||||| ||||| Sbjct 565941 GGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATG 565882 Query 111761 GGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCA 111818 || || || || | || | || || || || ||| ||| || | || | | Sbjct 565881 GGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAC--GAACCGGTCGCGCGGA 565824 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 | ||||| | || || || || ||| ||| ||||| |||| ||| | | | Sbjct 565823 TGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGA 565764 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | ||||| || | ||| ||||| ||||| | | || |||||||| || | Sbjct 565763 GCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGA 565704 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC-T 111997 |||||| || || || || |||||||| || || | ||||| | || |||| Sbjct 565703 GCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGC 565645 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | ||||| || ||| ||||| | | |||||||| || ||||||||||||| Sbjct 565644 TCCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACC 565585 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 ||||| ||||||| ||||| ||| || Sbjct 565584 GCGACGCGCATGAGCATGTGCTGCGG 565559 >seq2 Length=1972963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATT-TTCGCGGGCGA 11678 ||| || | ||| |||||||| || ||||||| || || || || ||| || | Sbjct 1712371 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 1712312 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 | ||| || ||||| || | ||||||| ||||| || |||||||| || || | | Sbjct 1712311 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 1712253 Query 11739 CGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | | ||| || | || ||| ||||| | ||| || ||| | ||| ||||||||| Sbjct 1712252 AGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGC 1712194 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||| || ||||| || || | ||| | |||||| || |||||||||||||| Sbjct 1712193 GTCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACC 1712138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031764488000