Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 349 4e-91 seq6 122 1e-22 seq14 118 1e-21 seq17 105 7e-18 >seq15 Length=702288 Score = 349 bits (386), Expect = 4e-91 Identities = 517/728 (71%), Gaps = 6/728 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250 ||||||||||||| | || |||||||| |||||| | |||| | || ||||||| Sbjct 565572 TCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATCG--AGACGTA 565629 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | ||| | ||||||||||||||| |||| || || |||||||| || || Sbjct 565630 CAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCAC 565689 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| || Sbjct 565690 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 565749 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| ||||||||| ||| || | |||||||||| | | || || ||||| | Sbjct 565750 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCT 565809 Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | | | | | ||| |||| |||| ||| | ||| || ||||||||| | | Sbjct 565810 CTCGATCCAC-AACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGA 565868 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||||||||| | |||||||||||| || |||||| ||||||| | Sbjct 565869 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAGGGAG 565928 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 565929 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 565988 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || || ||| || || | || ||| | ||| || ||| |||| Sbjct 565989 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 566048 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || ||||| || |||||||||||| | || ||| || ||| || ||| || Sbjct 566049 TTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 566108 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | |||||| |||| ||||| ||||| | |||||||| || ||||| || ||| Sbjct 566109 TCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 566168 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 | | | | ||||| |||| ||| |||| | || || | || | | Sbjct 566169 TCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATCCCCGCCCAGAAGCTCT 566228 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || ||||| || |||||| |||||||| | || | |||| |||||||||| Sbjct 566229 GGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGATG 566288 Query 53910 CGGTCAAC 53917 | | |||| Sbjct 566289 CCGCCAAC 566296 Score = 147 bits (162), Expect = 2e-30 Identities = 321/466 (69%), Gaps = 25/466 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTG---GCGCCAATGCCAACCGCGTCGACGGCTCAGATC 55534 ||| | |||||||| ||||||| ||||| ||||| ||||| ||||| |||||| Sbjct 566982 GGCATCCGCAACTC---GCTCGTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATC 567038 Query 55535 ATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTA 55594 | ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 567039 CTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTC 567098 Query 55595 GCAGGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAAC 55651 || || ||||| || | || ||| | | ||| || ||||| | | | Sbjct 567099 GCCGGCGAGTTC--CAGG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGC 567155 Query 55652 AAGTGGAACC-CGCAGATCAAGACG--GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA 55707 ||||||| ||| ||| |||| ||| || | || ||||| || ||||||| Sbjct 567156 CTGTGGAACGACGC-GATGAAGAACACGATCATCGCGCACAACGGC---TCGATCCAGAA 567211 Query 55708 --TCTGGAGATTCCTCTGCGT-CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA 55764 || | ||| | || |||||| || ||| ||| ||||||||||| | || Sbjct 567212 CGTCCCCGGCATCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCA 567271 Query 55765 GAAGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTC 55823 ||| ||| | || ||| | || || || || |||| |||||||||||| ||||| | Sbjct 567272 AAAG-GTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGC 567330 Query 55824 TGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGT 55883 | ||| || | | | || | |||| || | | ||||||||||| ||||| | Sbjct 567331 TCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGAT 567390 Query 55884 GGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGC 55929 ||||||| || ||||||||||| |||||||| || || |||||||| Sbjct 567391 GGAAGAAAGGTCTCAAGACGGGCATGTACTACCTCCGCACCCGCGC 567436 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 75071 CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTC 75130 |||| | |||||||| | |||||||| |||||||| || ||| || || || | Sbjct 257934 CTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTCCAC 257875 Query 75131 GATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAA 75190 | ||||| |||||||||||||||| |||||||| || || || || ||| || Sbjct 257874 CAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGATGAA 257815 Query 75191 GTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 ||| ||||| | ||| || ||| |||||| ||| ||||||| Sbjct 257814 GTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCC 257772 >seq6 Length=1546759 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| || | ||||||||| |||||||| || || ||||| || ||||| Sbjct 35811 CGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTG 35752 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || ||||| | ||||| ||||||| ||| || || ||||| || | || Sbjct 35751 GCCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCGAC 35692 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || ||||||||||| || || |||||||| ||||||| ||||||| |||||| || Sbjct 35691 GATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCC 35632 Query 152208 CG 152209 || Sbjct 35631 CG 35630 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| || || |||||||| || |||||||||||||| || Sbjct 35810 GTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTGG 35751 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| |||||||| || || | | ||| Sbjct 35750 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCGACG 35691 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || || || || || ||||| ||||||| ||||||| | ||||||| Sbjct 35690 ATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 35631 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 35630 GAAAGCTGGCCGACCT 35615 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 119084 TTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCGT 119141 ||||| |||||||| ||||| ||||| || ||||| ||| | || ||| ||||||| Sbjct 33512 TTGGCGAGCTTGGCGCCGTAGCCGTTTCGTCCACCCGTC--GTCTTGGCCTCGTCGTCGT 33455 Query 119142 TGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 33454 CGTAGTTTGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 33409 >seq14 Length=779201 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||| ||||| |||||||| | |||||||| || || | ||| Sbjct 612953 AAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCGTCGGGCTGGTCCTG 612894 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 ||||||||| |||||||| |||||||||| || | ||||| |||||||||||||| || Sbjct 612893 CTGGAGCATGCGCCACATGCCCTCGACGTAGTCACGAGCGTGTCCCCAGTCGCGCTTCGC 612834 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 612833 GTCGAGGTTACCGAG 612819 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||| ||||| || || | | || || || || Sbjct 612965 CGCCTTCTCGACAAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCGTC 612906 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| |||||| | ||| |||||||| | | ||||||||| ||||| ||||| Sbjct 612905 GGGCTGGTCCTGCTGGAGCATGCGCCACATGCCCTCGACGTAGTCACGAGCGTGTCCCCA 612846 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAG 124627 ||||||||| || || ||||| ||||| Sbjct 612845 GTCGCGCTTCGCGTCGAGGTTACCGAG 612819 >seq17 Length=587597 Score = 105 bits (116), Expect = 7e-18 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||||||||| | ||||||||| || ||||| | ||| |||| || || | || Sbjct 221686 CAACAAACTCGCGAACAGGGTGCGTCTCGCCCGTCGCGAGGACATAGTCGTCCGG-CTGG 221744 Query 158999 GCT-GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGC 159057 || | || | |||| |||||||| | |||||||| || ||||||| |||||||||||| Sbjct 221745 TCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGC 221804 Query 159058 TTGGCATCCATGTTCCCGAG 159077 |||||||| | ||| ||||| Sbjct 221805 TTGGCATCGAGGTTGCCGAG 221824 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||| | |||||| || | ||||||||| ||||| | | || | || || Sbjct 221678 CGCCTTCTCAACAAACTCGCGAACAGGGTGCGTCTCGCCCGTCGCGAGGACATAGTCGTC 221737 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 221738 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 221796 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 221797 AGTCGCGCTTGGCATCGAGGTTGCCGAG 221824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215794794000