Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6 165 9e-36
seq3 161 1e-34
seq5 125 8e-24
seq1 111 2e-19
seq13 104 3e-17
seq15 86.0 7e-12
>seq6
Length=1546759
Score = 165 bits (182), Expect = 9e-36
Identities = 211/289 (73%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113
|||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || |
Sbjct 35615 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 35674
Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173
|||| ||||||||||| ||| ||| || |||||||||||||| || ||| | |||
Sbjct 35675 CGCTGCAGGGCACCATCGTCGGCCTCGCGCAGAACTTTGTCGGCAGCAACAACATCAACG 35734
Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233
| ||||| || || ||||| || || || ||| || |||||||| || || |||
Sbjct 35735 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTCCAGGGCGGCAAGGACGCGGCCAGCG 35794
Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291
| |||||||||||||| ||| |||| | ||||||| | | ||| |||| |||||
Sbjct 35795 CTCGTTACATCTTCACGAACGTGGCGCAGAT--CACGCGCACGCTCTTCCACCCCTCGGA 35852
Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340
||| ||| | ||| | ||| | || ||||| ||| | ||||||||
Sbjct 35853 CGACGCGATCCTCGACTACCTTAACGACGACGGCCAGAGCATCGAGCCG 35901
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/112 (78%), Gaps = 4/112 (4%)
Strand=Plus/Plus
Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420
|||| |||||||| ||||| ||||| |||| | || ||| |||||| |||||||
Sbjct 33403 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCAAACTACGACGACGAC 33462
Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAA 30470
||| || || |||||||||||||| |||||||| || |||||||||||
Sbjct 33463 GAGGCCAAGACG--ACGGGTGGACGAAACGGCTACGGCGCCAAGCTCGCCAA 33512
>seq3
Length=1857496
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 877370 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 877429
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || |||||||||||||||||||| ||||| ||||||
Sbjct 877430 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 877489
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || || || || ||||| || ||||| | ||| || || ||| ||||| ||
Sbjct 877490 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGC-GACTACAA 877548
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || ||||| || ||| | | ||||||||
Sbjct 877549 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 877596
Score = 123 bits (136), Expect = 3e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
|| ||||| ||||| ||||| || | ||| | || | ||||| || ||||||||
Sbjct 877701 ATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGAT 877760
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
||||||||||| ||||| ||||| ||||| | || || || || ||||| ||||||||
Sbjct 877761 AAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 877820
Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
| |||||| || | || |||||| |||| || || || || || || || || |||||
Sbjct 877821 GGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGT 877880
Query 27622 CTTCGCGGTGG 27632
|| ||||| ||
Sbjct 877881 CTCCGCGGAGG 877891
Score = 109 bits (120), Expect = 6e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
|||||||| || |||||||||||||| || ||||| ||||||||||| | || || ||
Sbjct 878175 AAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCG 878234
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| || ||||| | || || || |||| || || |||| || || || ||
Sbjct 878235 GGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACG 878294
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|| || || || | |||||||||||||||
Sbjct 878295 CTGCACCTGGTGCTTCGTCTTCGCGGTGGA 878324
>seq5
Length=1666694
Score = 125 bits (138), Expect = 8e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||
Sbjct 1176601 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1176660
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||||| |||||| || | || || || |||| || || || ||
Sbjct 1176661 GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1176720
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 1176721 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1176749
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||
Sbjct 1177041 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1177100
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | |||||| || | || || || |||| || || || ||
Sbjct 1177101 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1177160
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 1177161 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1177189
>seq1
Length=2216040
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541
||||||| || || |||||||||||||| || || || ||||||||||| || || || |
Sbjct 892308 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCG 892367
Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601
| || ||||| |||||||| | || || || | ||||| || |||| ||||| || |
Sbjct 892368 CCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGA 892427
Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || || ||| | ||||| ||||| ||
Sbjct 892428 CCCTCCACCTCGTCCTCCGTCTCCGCGGCGG 892458
>seq13
Length=784862
Score = 104 bits (114), Expect = 3e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||||| || || || ||
Sbjct 701605 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCC 701546
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | || ||||| | ||||| || |||| ||||| || ||
Sbjct 701545 GGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 701486
Query 27604 CTTCATCTAGTC 27615
||||| || |||
Sbjct 701485 CTTCACCTCGTC 701474
>seq15
Length=702288
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
|| || || || || |||||||||||||||||||| || |||||||| ||||| | ||||
Sbjct 567436 GCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGC 567377
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| || |||||| ||| | || || | | | || ||| || ||||| |||||
Sbjct 567376 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 567317
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||| || || || || || || | || || | |||||| | || |||||
Sbjct 567316 TCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCAC 567257
Query 80212 ACTGT 80216
|| ||
Sbjct 567256 ACGGT 567252
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753
|||||||| || || | |||||| |||| || || ||||| || ||||| ||||
Sbjct 566735 GTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGAT 566676
Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813
|||||||||||| ||| |||||||||||| | ||||| |||| |||||
Sbjct 566675 CGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGAT 566616
Query 80814 GACGCGGTTCAGGTTG 80829
|| |||||||||||||
Sbjct 566615 GATGCGGTTCAGGTTG 566600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310186133600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |