Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq13 149 1e-30
seq3 149 1e-30
seq5 127 5e-24
seq1 114 3e-20
seq15 105 2e-17
seq4 89.7 1e-12
>seq13
Length=784862
Score = 149 bits (164), Expect = 1e-30
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||||||| || ||||| || |||||||| || |||| ||||| | || ||
Sbjct 701472 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 701531
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || |||||||| || | || |||||||||
Sbjct 701532 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 701591
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|||||||| || ||||| ||||| ||||| || || |||||||| ||||||
Sbjct 701592 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 701648
>seq3
Length=1857496
Score = 149 bits (164), Expect = 1e-30
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| ||||| |||||||||| ||| || | || ||
Sbjct 877876 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCC 877817
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| | ||| |||||||| ||||| | ||| ||||| |||
Sbjct 877816 TCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCC 877757
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|| ||||| || ||||| ||||||||||| || || |||||||||||||||
Sbjct 877756 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATC 877700
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| || || || || ||||| || |||||||| || || || || | || || ||
Sbjct 877578 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 877519
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
||||||||||| |||||||| | ||| || ||||| ||||| | ||| |||||||||||
Sbjct 877518 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGA 877459
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || ||||| ||||||||||| || || |||||||| ||||| |||||
Sbjct 877458 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 877399
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| || || | ||||||
Sbjct 877398 CCGGTGAGGGTCTTGACGAAGATCTGCAT 877370
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || ||||| || || |||||||| |||||||| ||||| | ||| ||
Sbjct 878317 CGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTG 878258
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||| || || |||||||| || |||||||| | ||| || ||||| ||||| | ||
Sbjct 878257 CGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCC 878198
Query 211014 TCCTTGTCCTGGATCTT 211030
|||||||||||||||||
Sbjct 878197 TCCTTGTCCTGGATCTT 878181
>seq5
Length=1666694
Score = 127 bits (140), Expect = 5e-24
Identities = 105/128 (82%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| |||||||| ||||||| ||| || | |||||
Sbjct 1176734 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCC 1176675
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||||||||| || || ||||| ||||| | ||| |||||||||
Sbjct 1176674 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1176615
Query 211023 TGGATCTT 211030
||||||||
Sbjct 1176614 TGGATCTT 1176607
Score = 123 bits (136), Expect = 6e-23
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| |||||||| ||||||| ||| || | || ||
Sbjct 1177174 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 1177115
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||||||||| || || ||||| ||||| | ||| |||||||||
Sbjct 1177114 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1177055
Query 211023 TGGATCTT 211030
||||||||
Sbjct 1177054 TGGATCTT 1177047
>seq1
Length=2216040
Score = 114 bits (126), Expect = 3e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| || |||| ||| || | || ||
Sbjct 892443 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 892384
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || ||||| || || | || |||||||||
Sbjct 892383 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 892324
Query 211023 TGGATCTT 211030
||||||||
Sbjct 892323 TGGATCTT 892316
>seq15
Length=702288
Score = 105 bits (116), Expect = 2e-17
Identities = 171/246 (70%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179
|||||| ||||| |||||||| | ||| ||| | || ||| |||| | | |
Sbjct 566290 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 566231
Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239
||| |||| |||||| ||| || ||||| || || ||||||||||||| |
Sbjct 566230 CCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 566171
Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299
|||||||| ||| || || ||||| || | ||||||||| ||||| ||||||||
Sbjct 566170 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 566111
Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359
||| ||| | |||| | || || || | |||||||||||| | | |||| | |||
Sbjct 566110 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 566051
Query 178360 ATAGAA 178365
| ||||
Sbjct 566050 AAAGAA 566045
>seq4
Length=768797
Score = 89.7 bits (98), Expect = 1e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 210929 TTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAG 210988
||| | ||| || |||| || || | || ||||| |||||||||| ||||||| ||
Sbjct 276161 TTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAG 276102
Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048
||| || ||||| || || || || ||||||||||||| ||| ||||| |||||
Sbjct 276101 GCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTGGATCAACACTTTGACGTTGTCGAT 276042
Query 211049 GGTGTCAGAGCT 211060
|||||| |||||
Sbjct 276041 GGTGTCCGAGCT 276030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151554450950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |