Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 152 1e-31 seq13 129 1e-24 seq1 96.9 7e-15 seq5 93.3 9e-14 seq12 84.2 5e-11 >seq3 Length=1857496 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| | | |||||||| | || || || |||||||||||||| Sbjct 877596 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 877537 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || |||||||| || || ||||| || Sbjct 877536 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 877477 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| Sbjct 877476 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 877417 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 877416 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 877370 Score = 123 bits (136), Expect = 5e-23 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| ||||| || | ||| ||||| ||||||||||| || | | Sbjct 878323 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 878264 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || ||||| || |||||||| || || ||||| || Sbjct 878263 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 878204 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTA-CGGTATCG 283031 |||||||||||||| |||||||| || || | | |||||| Sbjct 878203 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACCTGTATCG 878164 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||| || || || | ||| || || || ||||| || || ||||| || ||| Sbjct 877855 TCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 877796 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || |||||||| || || |||||||| || || ||||| || || ||| | Sbjct 877795 ATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTG 877736 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| ||||| || | ||||| |||||||||||| Sbjct 877735 TCGATGGTGTCGGACGACTCGACCTCGAGAGTGATC 877700 >seq13 Length=784862 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || |||||||| ||||| || || || ||||| ||| Sbjct 701493 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 701552 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| || || ||||||||||| |||||||| || || ||| | Sbjct 701553 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 701612 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| |||||||| | ||||| ||||| |||||| Sbjct 701613 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 701648 >seq1 Length=2216040 Score = 96.9 bits (106), Expect = 7e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| |||||||| ||||| || || || ||||| ||| Sbjct 892422 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 892363 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 |||| || || ||||| || || ||||||||||| |||||||| || || || Sbjct 892362 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC 892307 >seq5 Length=1666694 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || |||||||| || || ||||| || ||| Sbjct 1176713 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 1176654 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||| || ||||| || || ||||||||||| |||||||| || || || Sbjct 1176653 ATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC 1176598 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || || ||||| || || ||||| || ||| Sbjct 1177153 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 1177094 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||| || ||||| || || ||||||||||| |||||||| || || || Sbjct 1177093 ATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC 1177038 >seq12 Length=870200 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 315704 CACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTT 315763 ||||||| |||||||||| ||||||||||||||| || || |||| ||| ||||||| Sbjct 698130 CACCGAGCGCATCGCGGTCCAAAAAGTTGGTCGGCTCGTCGAGGACGAGGACCTGGGGTT 698071 Query 315764 GTTGCCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGA 315823 ||| | |||||| |||| |||| ||| | || || || || |||| ||||| | Sbjct 698070 TGGACCACATGGCGGCGGCGATGACGACCTTGACCTTCTGTCCGCCCGACAAACCACGCA 698011 Query 315824 T 315824 | Sbjct 698010 T 698010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738797659620