Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 158 3e-33 seq13 120 7e-22 seq5 118 3e-21 seq1 95.1 3e-14 >seq3 Length=1857496 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 877373 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 877432 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || ||||||||||| |||||||| Sbjct 877433 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 877492 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| || || || | || || ||| || ||| || Sbjct 877493 CGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAACATC 877552 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || || || ||||| ||||| || ||||| Sbjct 877553 CAGAAGGAGTCTACACTCCATCTGGTGTTGAG 877584 Score = 134 bits (148), Expect = 3e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 |||||| |||||||| || || ||||||||||| |||||||| ||||||||||| Sbjct 877700 GATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGA 877759 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 || || ||||||||||| ||||| || || | |||||||| || || |||||||| || Sbjct 877760 TAAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 877819 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | |||||| | |||||||| |||| ||||| || || || || || || Sbjct 877820 CGGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGT 877873 >seq13 Length=784862 Score = 120 bits (132), Expect = 7e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| ||||| |||||||| ||||| ||||| Sbjct 701648 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 701589 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || ||||| || |||||||| || || ||||||||||| || |||||||| || Sbjct 701588 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 701529 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || || | || || ||| |||| || || || || || || || || Sbjct 701528 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 701475 >seq5 Length=1666694 Score = 118 bits (130), Expect = 3e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || || Sbjct 1176607 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1176666 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | |||||| | ||||| ||| |||| ||||| || || || || Sbjct 1176667 CAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1176726 Query 178125 CTTGT 178129 || || Sbjct 1176727 CTCGT 1176731 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || || Sbjct 1177047 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1177106 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | ||||| ||| |||| ||||| || || || || Sbjct 1177107 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1177166 Query 178125 CTTGT 178129 || || Sbjct 1177167 CTCGT 1177171 >seq1 Length=2216040 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||| || || ||||||||||| || Sbjct 892316 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 892375 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | || || ||| |||| || || || || || || Sbjct 892376 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 892435 Query 178125 CTTGT 178129 || || Sbjct 892436 CTCGT 892440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730737315820