Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3 158 3e-33
seq13 120 7e-22
seq5 118 3e-21
seq1 95.1 3e-14
>seq3
Length=1857496
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||||||||| || || |||
Sbjct 877373 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 877432
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || ||||||||||| ||||||||
Sbjct 877433 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 877492
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || ||||| || || || | || || ||| || ||| ||
Sbjct 877493 CGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAACATC 877552
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135
|| || || || ||||| ||||| || |||||
Sbjct 877553 CAGAAGGAGTCTACACTCCATCTGGTGTTGAG 877584
Score = 134 bits (148), Expect = 3e-26
Identities = 134/174 (77%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
|||||| |||||||| || || ||||||||||| |||||||| |||||||||||
Sbjct 877700 GATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGA 877759
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
|| || ||||||||||| ||||| || || | |||||||| || || |||||||| ||
Sbjct 877760 TAAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 877819
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | |||||| | |||||||| |||| ||||| || || || || || ||
Sbjct 877820 CGGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGT 877873
>seq13
Length=784862
Score = 120 bits (132), Expect = 7e-22
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| ||||| |||||
Sbjct 701648 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 701589
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || ||||| || |||||||| || || ||||||||||| || |||||||| ||
Sbjct 701588 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 701529
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | || || | || || ||| |||| || || || || || || || ||
Sbjct 701528 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 701475
>seq5
Length=1666694
Score = 118 bits (130), Expect = 3e-21
Identities = 101/125 (81%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || ||
Sbjct 1176607 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1176666
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| ||||| | |||||| | ||||| ||| |||| ||||| || || || ||
Sbjct 1176667 CAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1176726
Query 178125 CTTGT 178129
|| ||
Sbjct 1176727 CTCGT 1176731
Score = 113 bits (124), Expect = 1e-19
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || ||
Sbjct 1177047 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1177106
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | |||||| | ||||| ||| |||| ||||| || || || ||
Sbjct 1177107 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1177166
Query 178125 CTTGT 178129
|| ||
Sbjct 1177167 CTCGT 1177171
>seq1
Length=2216040
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||| || |||||||| || || ||||||||||| ||
Sbjct 892316 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 892375
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | |||||| | || || ||| |||| || || || || || ||
Sbjct 892376 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 892435
Query 178125 CTTGT 178129
|| ||
Sbjct 892436 CTCGT 892440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730737315820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |