Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3 132 4e-26
seq1 131 2e-25
seq13 118 1e-21
seq5 89.7 5e-13
seq4 82.4 7e-11
>seq3
Length=1857496
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| | | ||||||||||| || || ||||||||| ||||| ||||||
Sbjct 877597 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 877538
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| |||| || ||||||||||| ||||| |||| |||||| ||||| | ||
Sbjct 877537 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 877478
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| | || || | ||| | | | ||||| ||||| |
Sbjct 877477 GATTCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGA 877419
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || || || ||||| ||||| |||||||||
Sbjct 877418 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 877369
Score = 100 bits (110), Expect = 3e-16
Identities = 134/184 (73%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||| || || || || ||| ||||| || ||||| || ||
Sbjct 877892 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGA 877833
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| ||||||||||| || ||||| |||| |||||||||||| | ||
Sbjct 877832 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGG 877773
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| ||| ||| | || || | ||| | | | |||||| |||||| |
Sbjct 877772 GATTCCCTCCTTATCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGA 877714
Query 41814 CCTC 41817
||||
Sbjct 877713 CCTC 877710
>seq1
Length=2216040
Score = 131 bits (144), Expect = 2e-25
Identities = 120/152 (79%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | || || || || || ||||||||| ||||| ||||| ||
Sbjct 892459 GCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 892400
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| |||||||||||||||||||| ||||||||||| ||||| | |||
Sbjct 892399 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 892340
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786
| || |||||||||| ||| || |||||
Sbjct 892339 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA 892308
>seq13
Length=784862
Score = 118 bits (130), Expect = 1e-21
Identities = 91/108 (84%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 701492 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 701551
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| |||||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 701552 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 701599
>seq5
Length=1666694
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || ||
Sbjct 1177190 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 1177131
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| ||||||||||| || ||||| || || ||||| ||||| | ||
Sbjct 1177130 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 1177071
Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778
| | |||||||||| ||| ||
Sbjct 1177070 GATTCCCTCCTTGTCCTGGATCTT 1177047
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || ||
Sbjct 1176749 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1176690
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| || ||||| || || ||||| ||||| | ||
Sbjct 1176689 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1176630
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| | |||||||||| ||| ||
Sbjct 1176629 ATTCCCTCCTTGTCCTGGATCTT 1176607
>seq4
Length=768797
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCT-GAATGTTATAGTCGG 41693
|||||| ||||| || ||||| |||| || | | ||| | ||| ||| ||||| |
Sbjct 276203 GCCGCCACGTAGGCGAGTGACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCG 276145
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
|||| ||||| |||| ||||||||||||| |||| ||||||||||| ||||| | |
Sbjct 276144 AGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCG 276085
Query 41754 GAACGCTCTCCTTGTCC 41770
| |||| |||||||
Sbjct 276084 GGACGCCAAGCTTGTCC 276068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303826636000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |