Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq314 165 8e-36 seq31 150 2e-31 seq94 136 4e-27 seq21 132 5e-26 seq3 118 1e-21 seq144 105 7e-18 seq98 104 2e-17 seq111 96.9 4e-15 seq361 89.7 5e-13 >seq314 Length=39162 Score = 165 bits (182), Expect = 8e-36 Identities = 177/230 (77%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCA-TCCCCGCGGACC 40807 |||| | | | |||| |||||| || |||| ||||| ||||| | |||| | |||| Sbjct 38841 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACC 38899 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||||||||| ||||| || |||| ||||| |||| |||||||| Sbjct 38900 AGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACA 38959 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| | || || ||||| |||||| | ||| | || ||| Sbjct 38960 ACATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 39009 >seq31 Length=506143 Score = 150 bits (166), Expect = 2e-31 Identities = 140/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748 |||| | || |||||| | | |||||||| || ||| ||||||||||| || ||||| Sbjct 247592 GGACATCTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGACACTTCAT 247533 Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808 | |||||| || ||||| |||||||| |||||||||||||||||||| |||| || Sbjct 247532 CTCGCACGTCCTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGA 247473 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | | ||| | |||||||||| | ||||||||||| || |||||||| || |||||| Sbjct 247472 GAGGTTCTCGGCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGATC 247415 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||||||||||||||| |||||| | | | |||| || | || || | Sbjct 247182 AGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTGTTTGCGGAACGAC 247123 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || | Sbjct 247122 TGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 247063 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 |||| || || || ||| | ||||||||| |||| ||| Sbjct 247062 GGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTC 247025 Score = 91.5 bits (100), Expect = 2e-13 Identities = 201/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||| || || || |||||||||||| | || ||| | Sbjct 246963 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 246904 Query 117203 CATTTGGTGCAGCGACCGAGCGCGGCGC-GCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || ||||| ||||| | | ||||| | ||| || |||| || |||| Sbjct 246903 CACCTCGAGCGCCGACC-AGCGCCTCACCGCGTCGCCCAAATCATCGCCGAAGCCGTCGA 246845 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||| || || || |||| || | || | || | || |||| Sbjct 246844 GATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAAC-GCGA 246786 Query 117322 AACG-ATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380 | ||| || ||||||||||||||||| ||| | |||| ||| ||| | || Sbjct 246785 CCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG 246726 Query 117381 CCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 |||| ||||| | |||||| | ||||||||| | | ||||| ||||| Sbjct 246725 AGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAG 246670 >seq94 Length=311871 Score = 136 bits (150), Expect = 4e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| || | ||||||||||||||||||| |||||| | | | ||| | ||| Sbjct 54816 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGAC-GAGCGCTCCGT 54758 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||||||||||||| || || ||||| |||||||||||| ||||||| || ||| || Sbjct 54757 CTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 54698 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| |||||| | |||||||| || || ||| Sbjct 54697 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 54646 Score = 105 bits (116), Expect = 7e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||||||||| || |||||||||||| | || ||| | Sbjct 54544 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 54485 Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || || || | | || || ||| | ||| | ||| ||||||| Sbjct 54484 CACCTCGAGCGCCGCCCTCACCCCGAAACG-GTCGAGCGCATCATTCGCGAGGCGGTCGA 54426 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||||||||| |||||||| || || | || | || |||| Sbjct 54425 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAGCGA 54366 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || |||||||||||||| || ||| | |||| ||| || | | || Sbjct 54365 CCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAACGA 54306 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| |||| ||| | |||||| | ||||||||| || | ||||| ||||| Sbjct 54305 GAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 54251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||||||| |||||| || ||||| || Sbjct 105919 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAG 105978 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || || || || |||||||||||||| ||| | || || || || ||| || Sbjct 105979 GACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 106038 Query 40903 CG 40904 || Sbjct 106039 CG 106040 >seq21 Length=367166 Score = 132 bits (146), Expect = 5e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| || | ||||||||||||||||||| ||||||| | | | || | ||| Sbjct 352397 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGAC-GACCGCTCCGT 352339 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 |||||||||||| || || || ||||| |||||||||||| ||||||| || ||| || Sbjct 352338 CTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 352279 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| |||||| | |||||||| || || ||| Sbjct 352278 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 352227 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTT 116745 |||||| ||||||||| | | ||||||| | | || ||| ||||| | || Sbjct 352880 GGACCTCTCCAAGGACCTCAACCACTGGGACAACAAGCTCAAGGACGACGAGAAGTACTT 352821 Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 |||| |||||| || ||||| ||||||||| |||||||||||||||||||| |||| Sbjct 352820 CATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 352761 Query 116806 CGAG 116809 |||| Sbjct 352760 CGAG 352757 >seq3 Length=57953 Score = 118 bits (130), Expect = 1e-21 Identities = 156/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | | Sbjct 50562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 50621 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||||||||| | |||||| Sbjct 50622 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 50681 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| |||||| || ||||| || || | || || || || |||||| Sbjct 50682 CAGCGCTTGATCTTCGCGGG-AAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 50740 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || ||| |||| Sbjct 50741 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 50775 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || | |||| || Sbjct 51183 TCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCG 51242 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || |||| ||||| || || |||||||||||||| ||| | | Sbjct 51243 CGGGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTA 51302 Query 40886 CGCTGCATCTAGTG 40899 ||||||| || ||| Sbjct 51303 CGCTGCACCTGGTG 51316 >seq144 Length=22955 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | |||||| | | |||| |||||| || |||| || Sbjct 23 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 81 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| ||||||||||| | |||||||| || | |||| |||||| || ||||| || || Sbjct 82 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 141 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || | || |||||||| || ||||| | || ||||| || || ||| | Sbjct 142 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 201 Query 40905 CTTGAGGGGCGG 40916 ||| | || || Sbjct 202 GTTGCGCGGTGG 213 >seq98 Length=54307 Score = 104 bits (114), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || || | || Sbjct 35534 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 35476 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || || Sbjct 35475 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 35416 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || ||||||||||| ||||||||| | || || || || || Sbjct 35415 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 35362 >seq111 Length=69946 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||||||||| | |||||||| || ||||| | || Sbjct 54226 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCG 54285 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || ||| ||||| ||| | |||||||| | || | ||| | | Sbjct 54286 CGGGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGA 54345 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 | || ||||| || |||||| | | ||||||| Sbjct 54346 CCCTTCATCTCGTCTTGCGCCTACGCGGCGGCG 54378 >seq361 Length=17270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || || |||| || Sbjct 8846 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 8787 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || |||| || || || || |||||||||||||| ||| | | Sbjct 8786 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 8727 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 8726 CCCTCCACCTCGTGCTGCG 8708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || || |||| || Sbjct 9286 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 9227 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || || | || || || || |||||||||||||| ||| | | Sbjct 9226 CGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 9167 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 9166 CCCTCCACCTCGTGCTGCG 9148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216849312400