Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq314 96.9 4e-15 seq144 93.3 5e-14 seq98 91.5 2e-13 seq94 87.8 2e-12 >seq3 Length=57953 Score = 107 bits (118), Expect = 2e-18 Identities = 142/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | ||||| || | || || |||||||| || ||||| Sbjct 50752 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCC-GCGAA 50694 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||||| || | || |||||||||| ||| | || | |||| Sbjct 50693 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 50635 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || |||| |||||||| ||||| || || ||||| | Sbjct 50634 TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 50575 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 50574 CGAAGATCTGCAT 50562 >seq314 Length=39162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||| ||| | ||| |||||| || || ||||| || || || || |||| Sbjct 38994 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 38935 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCA-CGCTCTCCTTGT 43089 || |||||||| || ||||| || | ||||||||||||| || | | |||||||| Sbjct 38934 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTTGT 38875 Query 43090 CCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| | || | |||| ||| | | | ||||| || || || |||| ||||| Sbjct 38874 CC-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 38817 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| || ||||| ||||| Sbjct 38816 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 >seq144 Length=22955 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||| || || || |||| || |||||||| || ||||| Sbjct 177 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 118 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | ||||||||||||| ||| | || |||||||||| ||| | || | |||| ||| Sbjct 117 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 60 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | | ||||||| ||| || || |||| ||||| Sbjct 59 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 23 >seq98 Length=54307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || || Sbjct 35379 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 35438 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 35439 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 35497 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | | |||||| ||| || || |||| ||||| Sbjct 35498 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 35534 >seq94 Length=311871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||| | ||||| || |||| || |||||||| || ||||| Sbjct 106017 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 105958 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| ||||||||||||| || | || |||||||||| ||| || Sbjct 105957 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 105910 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| || |||||| ||||| || || || || || ||| | Sbjct 106351 ACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCC 106292 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || | ||||||||||| | ||| | || |||||| Sbjct 106291 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 106232 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | ||||||| ||| || || |||| ||| Sbjct 106231 GTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTG 106174 Query 43146 AT 43147 || Sbjct 106173 AT 106172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814991082200