Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
seq314 96.9 4e-15
seq144 93.3 5e-14
seq98 91.5 2e-13
seq94 87.8 2e-12
>seq3
Length=57953
Score = 107 bits (118), Expect = 2e-18
Identities = 142/193 (74%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| | ||||| || | || || |||||||| || |||||
Sbjct 50752 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCC-GCGAA 50694
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| | ||||||||||||| || | || |||||||||| ||| | || | ||||
Sbjct 50693 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 50635
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| || || |||| |||||||| ||||| || || ||||| |
Sbjct 50634 TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 50575
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 50574 CGAAGATCTGCAT 50562
>seq314
Length=39162
Score = 96.9 bits (106), Expect = 4e-15
Identities = 155/216 (72%), Gaps = 5/216 (2%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||||| ||| | ||| |||||| || || ||||| || || || || ||||
Sbjct 38994 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 38935
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCA-CGCTCTCCTTGT 43089
|| |||||||| || ||||| || | ||||||||||||| || | | ||||||||
Sbjct 38934 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTTGT 38875
Query 43090 CCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|| ||| | || | |||| ||| | | | ||||| || || || |||| |||||
Sbjct 38874 CC-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 38817
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || || ||||| || ||||| |||||
Sbjct 38816 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781
>seq144
Length=22955
Score = 93.3 bits (102), Expect = 5e-14
Identities = 118/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||||||||| |||||||| || || || |||| || |||||||| || |||||
Sbjct 177 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 118
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| | ||||||||||||| ||| | || |||||||||| ||| | || | |||| |||
Sbjct 117 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 60
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | | ||||||| ||| || || |||| |||||
Sbjct 59 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 23
>seq98
Length=54307
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || ||
Sbjct 35379 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 35438
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 35439 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 35497
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | | |||||| ||| || || |||| |||||
Sbjct 35498 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 35534
>seq94
Length=311871
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || || || |||||||| | ||||| || |||| || |||||||| || |||||
Sbjct 106017 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 105958
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
||||| ||||||||||||| || | || |||||||||| ||| ||
Sbjct 105957 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 105910
Score = 84.2 bits (92), Expect = 3e-11
Identities = 131/182 (72%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| |||| || |||||| ||||| || || || || || ||| |
Sbjct 106351 ACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCC 106292
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| || ||||| || | ||||||||||| | ||| | || ||||||
Sbjct 106291 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 106232
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
|||| ||| | || | |||| ||| | | | ||||||| ||| || || |||| |||
Sbjct 106231 GTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTG 106174
Query 43146 AT 43147
||
Sbjct 106173 AT 106172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814991082200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |