Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq74 183 7e-41 seq84 100 6e-16 seq123 87.8 4e-12 >seq74 Length=129003 Score = 183 bits (202), Expect = 7e-41 Identities = 441/666 (66%), Gaps = 15/666 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| ||||| || ||| | || |||||| | | || ||| Sbjct 35031 TTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCCGAGCGACCG 35090 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| || ||| || ||||| || ||| | || Sbjct 35091 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATC 35150 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| | ||| || || | | || || || | ||||||||||||||| Sbjct 35151 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 35210 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| || || ||||| |||||||| || | | ||| | |||||||| Sbjct 35211 GCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCG 35270 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || |||||||| | ||||| ||| || || || || ||| Sbjct 35271 ATCGAGGGCATCTACGACACGCTCA---AGACGTGCGCGCTCATCTCCAAGACGGCAGGC 35327 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||| ||||| || ||||||||| |||| |||||||||||| || || || Sbjct 35328 GGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAAC 35387 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || ||| | ||| | || || | | ||| || | | | || Sbjct 35388 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 35447 Query 249250 AACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCAC 249303 |||||| || ||||| ||| |||||||||| || | || ||||||| Sbjct 35448 GACCAGGGAGGCAACAAGCGCC---CGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCAC 35504 Query 249304 GCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCG 249363 ||||| || || |||||||| ||| | |||||| ||||||| ||| | | ||| Sbjct 35505 GCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCG 35564 Query 249364 CGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGAC 249423 || ||| | |||| | ||| ||| || ||||| | |||||| || ||| || || Sbjct 35565 CGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAAC 35624 Query 249424 GGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCC 249483 ||||| ||| | || | | ||| |||| || || | ||| ||| | |||||| | Sbjct 35625 GGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGAC 35684 Query 249484 GACTTC 249489 || ||| Sbjct 35685 GAGTTC 35690 >seq84 Length=230923 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 ||||| |||||| || | ||||| |||||||| ||| | ||||| |||||||||||| Sbjct 63025 CCGCCGTTCAAGATCATCATCCTCGACGAGGCAGACTCGATGACCCAAGACGCGCAGTCC 62966 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 ||||||||||||| ||||||| ||||| | ||| | || ||| || | |||||| Sbjct 62965 GCCCTCCGCCGAATCATGGAGAACCACTCGAAGATCACGAGGTTCTGCTTGATCTGCAAC 62906 Query 254325 TACGT 254329 ||||| Sbjct 62905 TACGT 62901 >seq123 Length=412796 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 ||||| |||||| || | ||||| |||||||| ||| | ||||| ||||||||||| Sbjct 91791 CCGCCGTTCAAGATCATCATCCTCGACGAGGCAGACTCGATGACTCAGGACGCGCAGTCT 91732 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 ||||| ||||| | ||||||| ||||| | ||| | || ||| || | |||||| Sbjct 91731 GCCCTTCGCCGCATCATGGAGAACCACTCGAAGATCACGAGGTTCTGCTTGATCTGCAAC 91672 Query 254325 TACGTG 254330 |||||| Sbjct 91671 TACGTG 91666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761378464320