Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq74 306 3e-78 seq21 102 7e-17 seq3 102 7e-17 seq314 98.7 9e-16 seq94 98.7 9e-16 seq144 84.2 2e-11 >seq74 Length=129003 Score = 306 bits (338), Expect = 3e-78 Identities = 511/739 (69%), Gaps = 0/739 (0%) Strand=Plus/Minus Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 |||||||||||||||| | || |||||||||||||||| | ||||| || || ||| Sbjct 35816 ATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTACCA 35757 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262 | |||| ||| | | ||| | | || || | ||||||||||| | | Sbjct 35756 GAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAAGAG 35697 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 | | | || ||| | ||||| ||| || ||||||| | ||| || | ||| Sbjct 35696 CTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAAGAG 35637 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||| || | || || || ||| || || || || ||||| || || | Sbjct 35636 GGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAA 35577 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||||| ||||| ||||| |||||||| |||||| |||||| | || | || || Sbjct 35576 GAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTC 35517 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| ||||| Sbjct 35516 GAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCC 35457 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| |||||||| || ||||||||||||||||| | ||||| || | || ||||| Sbjct 35456 TCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTT 35397 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 || |||| ||| || | |||||| | || || | |||||| | || Sbjct 35396 CGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAG 35337 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || ||||| || ||| || || || | |||||| || || |||||||||||||| Sbjct 35336 GCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCC 35277 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 |||||| ||| || || ||| ||| | ||| ||||| || | |||| | ||||| Sbjct 35276 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGT 35217 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 |||| ||| || ||||| |||||||||||||| | | |||||| || ||||| Sbjct 35216 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 35157 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 ||| ||||| ||| |||||||| || ||||| || |||| ||||||||||| | ||| Sbjct 35156 CGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCAT 35097 Query 23863 GTATTGAGGTCTCTCGACC 23881 || || |||| |||| || Sbjct 35096 GTGCTGCGGTCGCTCGGCC 35078 Score = 194 bits (214), Expect = 1e-44 Identities = 407/600 (68%), Gaps = 15/600 (3%) Strand=Plus/Minus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 || || || ||| || || |||| |||||| |||| | |||||| || || || Sbjct 37005 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTA 36946 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217 |||||||||||| ||||| ||||||| |||| || || |||||||| | | |||| Sbjct 36945 CATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 36886 Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277 ||||| | | || || |||| |||||| ||| ||||| ||||| || || | Sbjct 36885 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGT 36827 Query 22278 CGGCGGCCATATTTATCAATGTACG--CAT---CGACATTTCCCATACGGTCTTGTACAG 22332 ||||||| | | | ||| ||| | | ||| || ||||| ||||||||||| | Sbjct 36826 CGGCGGCGAGGT----CGATG-ACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 36772 Query 22333 TTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392 || ||| ||| || || || |||||| || ||||| | ||||| Sbjct 36771 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 36712 Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452 | || || |||| |||||||||| ||| | || | || || || | Sbjct 36711 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 36652 Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 ||| || || || |||||||||| | ||||||||| ||| |||||||| ||| |||| Sbjct 36651 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 36592 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || ||| || || ||||| |||||| ||||| ||||||||||| | Sbjct 36591 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCA 36532 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 || |||||||| | | |||||||| | ||| || ||| | | | ||||||||| Sbjct 36531 CACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCA 36472 Query 22633 CAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692 ||| || | |||||| || || ||||| |||||| ||||| | |||| | ||||| || Sbjct 36471 CAGGTCCGTCGGCGTGAC---GTTCCACAGATCGTACTGCAAGAGGCCGTGGCTCGCGGG 36415 >seq21 Length=367166 Score = 102 bits (112), Expect = 7e-17 Identities = 220/322 (68%), Gaps = 33/322 (10%) Strand=Plus/Minus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || ||||||||||| |||||||| || || ||||| ||||| | | ||| Sbjct 352126 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 352067 Query 58137 CACATTGT------CAATAAACC--GACGCGG--GATCGCATCTTGGACATTATCACCGA 58186 ||| | | | | | || ||| ||| || |||||| ||| ||| Sbjct 352066 CACCTCGAGCGCCGCCCTCACCCCCGACACGGTCGAGCGCATC---------ATCCGCGA 352016 Query 58187 GGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC---GG 58243 |||||||| |||||| | ||||| |||| || || || || || || |||| || Sbjct 352015 GGCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGT---CAAGCTCATCGG 351959 Query 58244 TATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT--TTGCTC 58301 ||||||| || | |||| ||||||| ||||||||||||||| | ||| ||| || Sbjct 351958 CATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCG-CTTGCTTG-TC 351901 Query 58302 GAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGA 58359 | ||| | |||| || ||| ||| | | || ||||| || || ||| | ||| Sbjct 351900 GCACTTGGCAACGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTCATGGAGATGA 351843 Query 58360 TCTCGCTCGAGGGCAAGACAAA 58381 ||||| | ||||||||||| || Sbjct 351842 TCTCGATGGAGGGCAAGACCAA 351821 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||| |||| | || ||||||||||||||||||| || || ||||| || ||| || Sbjct 352337 TTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 352278 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 ||| | || || ||| | ||||| |||||| |||||||||| || || || Sbjct 352277 GCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 352228 >seq3 Length=57953 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| |||| Sbjct 50561 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 50620 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 50621 GGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 50680 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || ||| | || || | ||| | ||||| || Sbjct 50681 GCAGCGCTTGATCTTCGC-GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAA 50739 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| ||||| || || || Sbjct 50740 CATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 50772 >seq314 Length=39162 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 38780 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 38839 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG-TGCCGCCCGACC 31310 |||| |||| | ||||| | || ||||||||| || | || ||||||| Sbjct 38840 GGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACC 38899 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| | || ||||| ||||| ||| | || ||| | || | ||||| || | Sbjct 38900 AGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACA 38959 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||| || || || || || || |||||||| Sbjct 38960 ACATCCAGAAGGAGTCTACACTCCATCTGGT 38990 >seq94 Length=311871 Score = 98.7 bits (108), Expect = 9e-16 Identities = 212/311 (68%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || |||||||||||||||||||| || || ||||| ||||| | | ||| Sbjct 54544 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 54485 Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 ||| | | || || | | | || || | ||| || ||||||||||| Sbjct 54484 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATTCGCGAGGCGGTCGA 54426 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252 |||||| | ||||| ||||||| || || || || || || |||| ||||||| Sbjct 54425 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGT---CAAGCTTATCGGCATGAACAG 54369 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATT 58310 || | |||| ||||||| ||||| || || ||| || | | ||| ||| | Sbjct 54368 CGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAA 54309 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 |||| || ||| ||| | | || ||||| || |||||| | |||||||| | ||| Sbjct 54308 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 54251 Query 58371 GGCAAGACAAA 58381 |||||||| || Sbjct 54250 GGCAAGACCAA 54240 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287 ||||||| |||| || || ||||||||| |||| | ||||| | || ||| Sbjct 106171 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 106230 Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | || || Sbjct 106231 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 106290 Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | || | ||||| ||||||||||| || || ||||| || || ||||| ||| Sbjct 106291 CGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 106348 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970 |||||||| |||||| | ||| ||||| | ||||| || | |||| ||| Sbjct 54804 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 54749 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | || ||||||||||||||||||| || || ||||| || ||| || ||| | || Sbjct 54748 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 54689 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || ||| | ||||| |||||| |||||||||| || || || Sbjct 54688 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 54647 >seq144 Length=22955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287 ||||||| |||| || || ||||||||| |||| | ||||| | || ||| Sbjct 22 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 81 Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| ||| | ||||||||||||||||| | || ||||| || || ||| | || || Sbjct 82 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 141 Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | || | ||||| ||||||||||| |||||||| || || || || Sbjct 142 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764366190800