Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq74 306 3e-78
seq21 102 7e-17
seq3 102 7e-17
seq314 98.7 9e-16
seq94 98.7 9e-16
seq144 84.2 2e-11
>seq74
Length=129003
Score = 306 bits (338), Expect = 3e-78
Identities = 511/739 (69%), Gaps = 0/739 (0%)
Strand=Plus/Minus
Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202
|||||||||||||||| | || |||||||||||||||| | ||||| || || |||
Sbjct 35816 ATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTACCA 35757
Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262
| |||| ||| | | ||| | | || || | ||||||||||| | |
Sbjct 35756 GAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAAGAG 35697
Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
| | | || ||| | ||||| ||| || ||||||| | ||| || | |||
Sbjct 35696 CTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAAGAG 35637
Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382
||| || | || || || ||| || || || || ||||| || || |
Sbjct 35636 GGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAA 35577
Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442
||||| ||||| ||||| |||||||| |||||| |||||| | || | || ||
Sbjct 35576 GAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTC 35517
Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502
|| | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| |||||
Sbjct 35516 GAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCC 35457
Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562
||||| |||||||| || ||||||||||||||||| | ||||| || | || |||||
Sbjct 35456 TCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTT 35397
Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622
|| |||| ||| || | |||||| | || || | |||||| | ||
Sbjct 35396 CGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAG 35337
Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682
|| ||||| || ||| || || || | |||||| || || ||||||||||||||
Sbjct 35336 GCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCC 35277
Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742
|||||| ||| || || ||| ||| | ||| ||||| || | |||| | |||||
Sbjct 35276 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGT 35217
Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802
|||| ||| || ||||| |||||||||||||| | | |||||| || |||||
Sbjct 35216 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 35157
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
||| ||||| ||| |||||||| || ||||| || |||| ||||||||||| | |||
Sbjct 35156 CGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCAT 35097
Query 23863 GTATTGAGGTCTCTCGACC 23881
|| || |||| |||| ||
Sbjct 35096 GTGCTGCGGTCGCTCGGCC 35078
Score = 194 bits (214), Expect = 1e-44
Identities = 407/600 (68%), Gaps = 15/600 (3%)
Strand=Plus/Minus
Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158
|| || || ||| || || |||| |||||| |||| | |||||| || || ||
Sbjct 37005 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTA 36946
Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217
|||||||||||| ||||| ||||||| |||| || || |||||||| | | ||||
Sbjct 36945 CATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 36886
Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277
||||| | | || || |||| |||||| ||| ||||| ||||| || || |
Sbjct 36885 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGT 36827
Query 22278 CGGCGGCCATATTTATCAATGTACG--CAT---CGACATTTCCCATACGGTCTTGTACAG 22332
||||||| | | | ||| ||| | | ||| || ||||| ||||||||||| |
Sbjct 36826 CGGCGGCGAGGT----CGATG-ACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 36772
Query 22333 TTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392
|| ||| ||| || || || |||||| || ||||| | |||||
Sbjct 36771 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 36712
Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452
| || || |||| |||||||||| ||| | || | || || || |
Sbjct 36711 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 36652
Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512
||| || || || |||||||||| | ||||||||| ||| |||||||| ||| ||||
Sbjct 36651 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 36592
Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572
||||| | || ||| || || ||||| |||||| ||||| ||||||||||| |
Sbjct 36591 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCA 36532
Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632
|| |||||||| | | |||||||| | ||| || ||| | | | |||||||||
Sbjct 36531 CACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCA 36472
Query 22633 CAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692
||| || | |||||| || || ||||| |||||| ||||| | |||| | ||||| ||
Sbjct 36471 CAGGTCCGTCGGCGTGAC---GTTCCACAGATCGTACTGCAAGAGGCCGTGGCTCGCGGG 36415
>seq21
Length=367166
Score = 102 bits (112), Expect = 7e-17
Identities = 220/322 (68%), Gaps = 33/322 (10%)
Strand=Plus/Minus
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || ||||||||||| |||||||| || || ||||| ||||| | | |||
Sbjct 352126 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 352067
Query 58137 CACATTGT------CAATAAACC--GACGCGG--GATCGCATCTTGGACATTATCACCGA 58186
||| | | | | | || ||| ||| || |||||| ||| |||
Sbjct 352066 CACCTCGAGCGCCGCCCTCACCCCCGACACGGTCGAGCGCATC---------ATCCGCGA 352016
Query 58187 GGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC---GG 58243
|||||||| |||||| | ||||| |||| || || || || || || |||| ||
Sbjct 352015 GGCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGT---CAAGCTCATCGG 351959
Query 58244 TATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT--TTGCTC 58301
||||||| || | |||| ||||||| ||||||||||||||| | ||| ||| ||
Sbjct 351958 CATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCG-CTTGCTTG-TC 351901
Query 58302 GAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGA 58359
| ||| | |||| || ||| ||| | | || ||||| || || ||| | |||
Sbjct 351900 GCACTTGGCAACGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTCATGGAGATGA 351843
Query 58360 TCTCGCTCGAGGGCAAGACAAA 58381
||||| | ||||||||||| ||
Sbjct 351842 TCTCGATGGAGGGCAAGACCAA 351821
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||| |||| | || ||||||||||||||||||| || || ||||| || ||| ||
Sbjct 352337 TTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 352278
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
||| | || || ||| | ||||| |||||| |||||||||| || || ||
Sbjct 352277 GCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 352228
>seq3
Length=57953
Score = 102 bits (112), Expect = 7e-17
Identities = 151/213 (71%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| ||||
Sbjct 50561 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 50620
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 50621 GGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 50680
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| || || ||| | || || | ||| | ||||| ||
Sbjct 50681 GCAGCGCTTGATCTTCGC-GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAA 50739
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || ||||| ||||| || || ||
Sbjct 50740 CATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 50772
>seq314
Length=39162
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| || || | ||
Sbjct 38780 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 38839
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG-TGCCGCCCGACC 31310
|||| |||| | ||||| | || ||||||||| || | || |||||||
Sbjct 38840 GGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACC 38899
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
||||||| | || ||||| ||||| ||| | || ||| | || | ||||| || |
Sbjct 38900 AGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACA 38959
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|||| || || || || || || ||||||||
Sbjct 38960 ACATCCAGAAGGAGTCTACACTCCATCTGGT 38990
>seq94
Length=311871
Score = 98.7 bits (108), Expect = 9e-16
Identities = 212/311 (68%), Gaps = 12/311 (4%)
Strand=Plus/Minus
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || |||||||||||||||||||| || || ||||| ||||| | | |||
Sbjct 54544 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 54485
Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195
||| | | || || | | | || || | ||| || |||||||||||
Sbjct 54484 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATTCGCGAGGCGGTCGA 54426
Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252
|||||| | ||||| ||||||| || || || || || || |||| |||||||
Sbjct 54425 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGT---CAAGCTTATCGGCATGAACAG 54369
Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATT 58310
|| | |||| ||||||| ||||| || || ||| || | | ||| ||| |
Sbjct 54368 CGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAA 54309
Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370
|||| || ||| ||| | | || ||||| || |||||| | |||||||| | |||
Sbjct 54308 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 54251
Query 58371 GGCAAGACAAA 58381
|||||||| ||
Sbjct 54250 GGCAAGACCAA 54240
Score = 96.9 bits (106), Expect = 3e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287
||||||| |||| || || ||||||||| |||| | ||||| | || |||
Sbjct 106171 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 106230
Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | || ||
Sbjct 106231 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 106290
Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
| || | ||||| ||||||||||| || || ||||| || || ||||| |||
Sbjct 106291 CGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 106348
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/162 (72%), Gaps = 8/162 (5%)
Strand=Plus/Minus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970
|||||||| |||||| | ||| ||||| | ||||| || | |||| |||
Sbjct 54804 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 54749
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | || ||||||||||||||||||| || || ||||| || ||| || ||| | ||
Sbjct 54748 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 54689
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
|| ||| | ||||| |||||| |||||||||| || || ||
Sbjct 54688 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 54647
>seq144
Length=22955
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287
||||||| |||| || || ||||||||| |||| | ||||| | || |||
Sbjct 22 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 81
Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||| ||| | ||||||||||||||||| | || ||||| || || ||| | || ||
Sbjct 82 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 141
Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
| || | ||||| ||||||||||| |||||||| || || || ||
Sbjct 142 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGT 195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764366190800
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