Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq94 91.5 2e-13 seq31 91.5 2e-13 seq21 91.5 2e-13 >seq94 Length=311871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||||||||| | ||| ||||| || ||||| || ||||| ||||| || Sbjct 54644 GAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAG 54703 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG--G 33747 ||||| |||||||| || || || || || || || | || | ||| || | || | Sbjct 54704 CCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGAG 54763 Query 33748 CGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||| ||| ||||| | | ||||| ||||||||||| Sbjct 54764 CGCTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTT 54804 >seq31 Length=506143 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || ||||| | |||||||| | |||||||||||||||||| || || || ||||| || Sbjct 247023 GAGAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAG 247082 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||| |||||||| || || ||||| || || || | |||| || || | ||||| Sbjct 247083 CCGGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCG 247142 Query 33750 C---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| ||||| | ||||| ||||||||||| Sbjct 247143 CGAGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTTCTT 247183 >seq21 Length=367166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||||||||| | ||| ||||| || ||||| || ||||| ||||| || Sbjct 352225 GAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAG 352284 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||| |||||||| || || || || || || || | || | ||| || | ||| | Sbjct 352285 CCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGAG 352344 Query 33750 CTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| | ||||| | | ||||| ||||||||||| Sbjct 352345 CGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 352385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814726457200