Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq94 95.1 2e-14 seq21 95.1 2e-14 seq40 87.8 3e-12 >seq94 Length=311871 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||||||||| |||||||||||||| || || || ||| ||||||| Sbjct 54744 CTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTC 54685 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||||||||| | ||||||||||| || Sbjct 54684 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 54650 >seq21 Length=367166 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||||||||| |||||||||||||| || || || ||| ||||||| Sbjct 352325 CTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTC 352266 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||||||||| | ||||||||||| || Sbjct 352265 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 352231 >seq40 Length=35700 Score = 87.8 bits (96), Expect = 3e-12 Identities = 216/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||||||||| ||| || ||||||| || | ||| |||||||| | | || || | Sbjct 7003 CCGTGCGTCAAGTGTCCGCCGTCGGCGAGGTTGAGGCCCATGATGCGGTCCTGAGGCTGG 6944 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | ||||||||||||| ||||||||||||| || || || || Sbjct 6943 ATGAGCGCGGTGAAGGCGGCAAAGTTGGCGGTCGAGCCCGAGTAAGGCTGGACGTTGACG 6884 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| || ||| | | |||||| ||| |||| ||| | || ||| Sbjct 6883 CCCCACCTGGCGCCGTCGAGGTGGAACGCCTCGAGCGCGCGCTTCTGGCACAACACCTCG 6824 Query 127627 A-TGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTA 127685 | | || |||| | |||||| || || ||||| || || || |||||||||||| Sbjct 6823 AGTTCG-TCGACGACCTCGTTGCCGCCGTAGTAGCGAGCGCCCGGGAGACCCTCCGAGTA 6765 Query 127686 CTTGTTGATG-AGACACGAACTCAT-GCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCC 127743 ||||||| || |||| ||| | | || | | | |||| || | ||| | ||| || Sbjct 6764 CTTGTTGGTGAAGAC-CGAGCCGTTGGCCTGCATG-ACCGCGAGCGAGGTGAGGTTCTCG 6707 Query 127744 GATGCGATCAACTCTAAGCC 127763 || ||||||| ||| | ||| Sbjct 6706 GACGCGATCAGCTCGAGGCC 6687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055818917400