Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq314 102 2e-16
seq3 86.0 1e-11
>seq314
Length=39162
Score = 102 bits (112), Expect = 2e-16
Identities = 154/218 (71%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | |||||| || ||||| || || ||||| || || | |||||| ||
Sbjct 38990 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 38931
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT-TCTTTATCCTG 104469
|| || || || || || || | | ||| || || ||||| ||||| || || |||||
Sbjct 38930 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTTGTCCTG 38871
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|||||| || || || || || | ||| || || || ||||| || || || |||||
Sbjct 38870 AATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTT 38811
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567
|| || || || || || || |||||||| | ||||
Sbjct 38810 GCCGGTGAGGGTCTTGACGAAGATCTGCATGGTCTGTA 38773
>seq3
Length=57953
Score = 86.0 bits (94), Expect = 1e-11
Identities = 138/197 (70%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || ||||| | ||| || || || || || ||
Sbjct 50757 GTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCC- 50699
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||| || || ||||| || || || || ||||||||||| || ||
Sbjct 50698 GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 50639
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || | || ||||| || || || ||||| || || || ||
Sbjct 50638 ACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 50579
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 50578 TTGACGAAGATCTGCAT 50562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151393015413420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |