Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq314 102 2e-16 seq3 86.0 1e-11 >seq314 Length=39162 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | |||||| || ||||| || || ||||| || || | |||||| || Sbjct 38990 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 38931 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT-TCTTTATCCTG 104469 || || || || || || || | | ||| || || ||||| ||||| || || ||||| Sbjct 38930 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTTGTCCTG 38871 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| || || || || || | ||| || || || ||||| || || || ||||| Sbjct 38870 AATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTT 38811 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 || || || || || || || |||||||| | |||| Sbjct 38810 GCCGGTGAGGGTCTTGACGAAGATCTGCATGGTCTGTA 38773 >seq3 Length=57953 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || ||||| | ||| || || || || || || Sbjct 50757 GTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCC- 50699 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || ||||| || || || || ||||||||||| || || Sbjct 50698 GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 50639 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || | || ||||| || || || ||||| || || || || Sbjct 50638 ACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 50579 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 50578 TTGACGAAGATCTGCAT 50562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393015413420