Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq314 104 2e-17
seq3 82.4 6e-11
>seq314
Length=39162
Score = 104 bits (114), Expect = 2e-17
Identities = 167/234 (71%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||||||||| ||||| | ||| ||||| |||||| || |||||||| || ||
Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCT 38950
Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || || ||||||| |||||||| || || | || || |||||||| || ||
Sbjct 38949 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 38890
Query 48619 CA-CACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675
| | ||||||||| ||| || ||||| | | || ||||| || | ||||||
Sbjct 38889 GATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTC 38832
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729
||||| || ||||| || |||||||| || || || || |||||||| ||
Sbjct 38831 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGT 38778
>seq3
Length=57953
Score = 82.4 bits (90), Expect = 6e-11
Identities = 159/231 (69%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||| | | | ||| | ||||| || |||||| || ||||||||||| |
Sbjct 50787 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG-A 50729
Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || || | ||||| |||||||| ||| || | || || |||||||| || ||
Sbjct 50728 AAGAGTACGACCATCCTCGAGCTGCTTCCCG-CGAAGATCAAGCGCTGCTGGTCGGGAGG 50670
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| ||| || ||||| | | || || || | |||||
Sbjct 50669 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAAC 50610
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729
||||| || ||||| || |||||||| || || || || |||||||| ||
Sbjct 50609 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGT 50559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421249326090365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |