Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq314 104 2e-17 seq3 82.4 6e-11 >seq314 Length=39162 Score = 104 bits (114), Expect = 2e-17 Identities = 167/234 (71%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||||||| ||||| | ||| ||||| |||||| || |||||||| || || Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCT 38950 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || || ||||||| |||||||| || || | || || |||||||| || || Sbjct 38949 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 38890 Query 48619 CA-CACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | ||||||||| ||| || ||||| | | || ||||| || | |||||| Sbjct 38889 GATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTC 38832 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || ||||| || |||||||| || || || || |||||||| || Sbjct 38831 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGT 38778 >seq3 Length=57953 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | ||| | ||||| || |||||| || ||||||||||| | Sbjct 50787 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG-A 50729 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | ||||| |||||||| ||| || | || || |||||||| || || Sbjct 50728 AAGAGTACGACCATCCTCGAGCTGCTTCCCG-CGAAGATCAAGCGCTGCTGGTCGGGAGG 50670 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || ||||| | | || || || | ||||| Sbjct 50669 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAAC 50610 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || ||||| || |||||||| || || || || |||||||| || Sbjct 50609 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGT 50559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249326090365