Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq314 98.7 9e-16
seq3 87.8 2e-12
>seq314
Length=39162
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/229 (70%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || | ||| | |||||||| || | ||||| ||||| || | ||| || |||||
Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 38949
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||||| ||||| || || | ||||| || | ||||| || |||||
Sbjct 38948 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 38889
Query 94901 ATACCT-TCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959
|| || || ||||| | ||| || ||||||||| | ||| ||||| | |||||
Sbjct 38888 ATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 38829
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| | |||||||| || || || || || || || ||||||||||||
Sbjct 38828 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 38780
>seq3
Length=57953
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/218 (70%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|||| ||| | ||| | || || ||||| || | ||| ||||| | || || ||
Sbjct 50775 CGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG--AAAGAGTACGAC 50718
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
|||||| ||||| || |||| || ||| || | ||||| || ||||| || || || |
Sbjct 50717 CATCCTCGAGCTGCTTCCCGCGAA-GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCT 50659
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | ||| || |||||||| | ||| ||||| | || || || | ||||
Sbjct 50658 TGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGA 50599
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|||| || || || || || || || ||||||||||||
Sbjct 50598 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 50561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448289154671400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |