Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq329 145 1e-30
seq17 145 1e-30
seq8 145 1e-30
seq25 132 8e-27
seq262 127 3e-25
seq42 123 4e-24
>seq329
Length=178956
Score = 145 bits (160), Expect = 1e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct 147858 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGTCGTGGC 147917
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 147918 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 147977
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 147978 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 148037
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||||||
Sbjct 148038 ACCTCGCTCGACGTCGTCTATGC 148060
Score = 145 bits (160), Expect = 1e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct 164440 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGTCGTGGC 164381
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 164380 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 164321
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 164320 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 164261
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||||||
Sbjct 164260 ACCTCGCTCGACGTCGTCTATGC 164238
>seq17
Length=384694
Score = 145 bits (160), Expect = 1e-30
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 168289 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 168348
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| ||||||| | |||| || |||| |||| || | ||||||||||||
Sbjct 168349 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTC 168408
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| | | |||| || | | ||| ||||||||||| || || ||||| ||||||
Sbjct 168409 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 168468
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || ||||||| ||
Sbjct 168469 TCGCTCGACGTCGTCTACGC 168488
>seq8
Length=155010
Score = 145 bits (160), Expect = 1e-30
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 46354 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 46295
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| ||||||| | |||| || |||| |||| || | ||||||||||||
Sbjct 46294 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTC 46235
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| | | |||| || | | ||| ||||||||||| || || ||||| ||||||
Sbjct 46234 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 46175
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || ||||||| ||
Sbjct 46174 TCGCTCGACGTCGTCTACGC 46155
>seq25
Length=277801
Score = 132 bits (146), Expect = 8e-27
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 252031 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 251972
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 251971 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 251912
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 251911 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 251852
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 251851 ACCTCGCTCGACGTCGTCTACGC 251829
Score = 127 bits (140), Expect = 3e-25
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 235494 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 235553
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 235554 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 235613
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | | ||| ||||||||||| || || ||||| |||
Sbjct 235614 CTCGAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTC 235673
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 235674 ACCTCGCTCGACGTCGTCTACGC 235696
>seq262
Length=378635
Score = 127 bits (140), Expect = 3e-25
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 226287 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 226346
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 226347 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 226406
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 226407 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 226466
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || |||| |||||
Sbjct 226467 ACCTCGCTCGACGTCGTTTATGC 226489
>seq42
Length=184044
Score = 123 bits (136), Expect = 4e-24
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 49649 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 49708
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 49709 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 49768
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | || | || | || || ||||||||||| || || ||||| |||
Sbjct 49769 CTCGAGAACATCATTCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 49828
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 49829 ACCTCGCTCGACGTCGTCTACGC 49851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074866277945
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |