Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq314 84.2 2e-11
seq31 84.2 2e-11
>seq314
Length=39162
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | || || || | || ||| |||| |||||| |
Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA-AGGCATACCTCCCGATCA 24109
||||||||||| | ||||| |||||| ||||| || || || |||||||| ||
Sbjct 38841 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCA 38900
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| | |||| | || |||||||| || || || | | | ||||||| || ||
Sbjct 38901 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 38960
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||| || || || |||||| | ||| | ||||| || ||| | || ||
Sbjct 38961 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 39008
>seq31
Length=506143
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104620 TTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTCAAAGTCTTAAAA 104679
|| ||||||||||||| || || | | |||||| ||||| || ||| | || |
Sbjct 246659 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 246718
Query 104680 TATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCGATGTACTCGCAC 104739
|| |||| |||||| ||| | || ||| ||||| || || |||||||||| | |
Sbjct 246719 AGCTTCTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGC 246778
Query 104740 ATAGAATGT-GCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTT 104798
|| || || || |||||||| | || ||||||| || |||| || | || || |
Sbjct 246779 AT-GAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCTG 246837
Query 104799 CTCGATGTCCACGGCTTC 104816
|||||| || ||||||||
Sbjct 246838 CTCGATCTCGACGGCTTC 246855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429934087456575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |