Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq314 84.2 2e-11 seq31 84.2 2e-11 >seq314 Length=39162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA-AGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| |||||| ||||| || || || |||||||| || Sbjct 38841 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCA 38900 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||||| || || || | | | ||||||| || || Sbjct 38901 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 38960 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || |||||| | ||| | ||||| || ||| | || || Sbjct 38961 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 39008 >seq31 Length=506143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104620 TTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTCAAAGTCTTAAAA 104679 || ||||||||||||| || || | | |||||| ||||| || ||| | || | Sbjct 246659 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 246718 Query 104680 TATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCGATGTACTCGCAC 104739 || |||| |||||| ||| | || ||| ||||| || || |||||||||| | | Sbjct 246719 AGCTTCTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGC 246778 Query 104740 ATAGAATGT-GCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTT 104798 || || || || |||||||| | || ||||||| || |||| || | || || | Sbjct 246779 AT-GAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCTG 246837 Query 104799 CTCGATGTCCACGGCTTC 104816 |||||| || |||||||| Sbjct 246838 CTCGATCTCGACGGCTTC 246855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934087456575