Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq314 150 2e-31 seq3 125 7e-24 seq74 123 2e-23 seq94 120 3e-22 seq361 111 1e-19 seq144 109 5e-19 seq98 89.7 5e-13 seq21 86.0 6e-12 seq111 82.4 7e-11 >seq314 Length=39162 Score = 150 bits (166), Expect = 2e-31 Identities = 172/230 (75%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||||||||| | || ||| | ||| | || |||||||| || |||||||| ||||| Sbjct 39009 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 38950 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 38949 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 38890 Query 131127 GATT-CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| || || ||||| | || | || || | ||||||| Sbjct 38889 GATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGA 38830 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 38829 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 38780 >seq3 Length=57953 Score = 125 bits (138), Expect = 7e-24 Identities = 166/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | |||||||||||| || ||||||||||| Sbjct 50788 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 50729 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 50728 AAGAGTACGACCATCCTCGAGCTGCTTCCC-GCGAAGATCAAGCGCTGCTGGTCGGGAGG 50670 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | || | || || | ||||| | Sbjct 50669 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAAC 50610 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 50609 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 50561 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | || | || ||||| || || ||||||||||| Sbjct 51333 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 51274 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| |||||| Sbjct 51273 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 51214 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 51213 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACCTG 51179 >seq74 Length=129003 Score = 123 bits (136), Expect = 2e-23 Identities = 303/448 (68%), Gaps = 21/448 (5%) Strand=Plus/Minus Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCAC 146105 ||||||| ||||||||||| || | |||| ||||| || || || ||| || | Sbjct 35514 AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTC 35455 Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165 ||||||| |||| || || ||||||| | ||||| | |||||| || |||| | | Sbjct 35454 CCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCG 35395 Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 ||||||||| | || | ||| | ||| | | || | | || Sbjct 35394 AGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 35335 Query 146226 CGAGACCGCC-GCCGTACTTGGATAT-AGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGC 146282 ||| ||||| ||||| |||||| || |||| |||| ||| |||||| |||||||||| Sbjct 35334 CGATGCCGCCTGCCGT-CTTGGAGATGAGCG-CGCACGTCTT-GAGCGTGTCGTAGATGC 35278 Query 146283 CGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG 146340 | || || ||| |||| || || || |||||||| | | ||||| ||| Sbjct 35277 CCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGG 35220 Query 146341 CGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCT----CATCA 146396 ||| || || ||| | |||||| |||||||||||| | | ||| ||| | Sbjct 35219 CGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAA----GTACCGCTCCGACATGA 35164 Query 146397 TCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCA 146456 ||||| ||||| ||| | |||||||||||| || ||||| | |||||||||| Sbjct 35163 GGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 35104 Query 146457 TGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 |||||||||| || || ||||| ||||| Sbjct 35103 TGAGCATGTGCTGCGGTCGCTCGGCCAC 35076 Score = 104 bits (114), Expect = 2e-17 Identities = 353/548 (64%), Gaps = 4/548 (1%) Strand=Plus/Minus Query 144748 GGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGA 144807 |||||| | |||||||||||||| ||||| || ||| |||| ||| ||||| Sbjct 36960 GGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGA 36901 Query 144808 CGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAAT 144867 ||| | | | || || ||| || | | || ||||| || || || || Sbjct 36900 CGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGAT 36841 Query 144868 GAAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCG 144925 ||| ||| |||||||||||| | || || | | ||||| || ||||| || Sbjct 36840 GAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAG--ATCTCCCACACG 36783 Query 144926 GTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTG 144985 |||||||| | || || | | ||| || |||||| | ||| ||||| || ||| Sbjct 36782 GTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTG 36723 Query 144986 TGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCA 145045 ||||| | || | |||| ||| || | |||| | || | |||| Sbjct 36722 TGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGG 36663 Query 145046 ATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTA 145105 | | | | ||||||||||| ||||||||||| | || || || || | ||| Sbjct 36662 AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTG 36603 Query 145106 GACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGC 145165 |||||| | || || || | |||||| ||| ||||| || ||||| ||||| ||| Sbjct 36602 GACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGC 36543 Query 145166 ATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA 145225 || ||| || | || ||||| | |||||||| | || | ||||| | | Sbjct 36542 ATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCG 36483 Query 145226 CCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285 |||| ||||| || |||||| | |||| ||||| ||||||||||| | ||| | | Sbjct 36482 GCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTGG 36423 Query 145286 CTGGCGGG 145293 || ||||| Sbjct 36422 CTCGCGGG 36415 >seq94 Length=311871 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| ||||| | || | ||||||||||| |||||||| || ||||| Sbjct 106363 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 106304 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 106303 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 106244 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 106243 AATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 106184 Query 131187 GTCGACGGT 131195 |||| ||| Sbjct 106183 CTCGAGGGT 106175 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 106052 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 105993 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 105992 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 105933 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 105932 ATGCCCTCCTTGTC 105919 >seq361 Length=17270 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 8695 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 8754 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 8755 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 8814 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 |||||| || ||||| ||| || ||||| ||| Sbjct 8815 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 8850 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 9136 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 9195 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 9196 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 9255 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||||| || ||||| ||| || ||||| ||| Sbjct 9256 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 9290 >seq144 Length=22955 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| | || || | || | |||||| |||||||||||||||||||| Sbjct 213 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGA 154 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| || ||| Sbjct 153 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 94 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 93 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 34 Query 131188 TCGACGGT 131195 |||| ||| Sbjct 33 TCGAGGGT 26 >seq98 Length=54307 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| ||||||||||| || | ||||| |||||| ||||||||||| Sbjct 35373 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 35432 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 35433 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 35492 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 35493 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 35531 >seq21 Length=367166 Score = 86.0 bits (94), Expect = 6e-12 Identities = 212/312 (68%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTA-TAA 46319 |||||||| || ||||||||||| || || || || |||||||| || ||| || | Sbjct 352126 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 352067 Query 46320 CAC-TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGG 46378 ||| ||| | || || | || | |||||||| || | |||| || ||||||| Sbjct 352066 CACCTCGAGCGC-CGCC---CTCACCCCCGACACGGTCGAGCGCATCATCCGCGAGGCGG 352011 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC- 46437 | | || ||| | ||||| | |||| || ||||||| || | ||||||||| Sbjct 352010 TCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 351951 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCA 46496 || ||| ||||| | |||||||||||||| || ||||| |||| || ||| ||| Sbjct 351950 GCGACCTCA-TGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCA-CTTGG 351893 Query 46497 CCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 | | |||| | ||| | || || || || || ||| | | ||||| |||| Sbjct 351892 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 351833 Query 46557 GGGCAAAACTAA 46568 |||||| || || Sbjct 351832 GGGCAAGACCAA 351821 >seq111 Length=69946 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | |||| || | ||| | |||||| ||| |||||| ||||| || Sbjct 54377 GCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTC 54318 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| |||||||| || ||| | || | ||||||||||| ||||| Sbjct 54317 GAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGG 54258 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 54257 GATGCCCTCCTTGTC 54243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010646441600