Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq74 98.7 1e-15 seq94 84.2 3e-11 seq21 84.2 3e-11 >seq74 Length=129003 Score = 98.7 bits (108), Expect = 1e-15 Identities = 361/556 (65%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || |||| | || || || | ||| ||||| || || |||||||| || | || Sbjct 35633 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 35574 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 35573 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 35514 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || || | |||||||| || | ||| ||||| | | || || || ||||| ||||| Sbjct 35513 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 35454 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | || ||||| || || || | | ||| || || || || || || Sbjct 35453 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 35394 Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| || || || || | ||| || || | || || || || || || || | Sbjct 35393 -GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 35335 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409 | || || |||||| | || ||||| | ||||| ||| || | ||| || ||||||||| Sbjct 35334 CGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 35276 Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 63467 || || || ||| |||| || | | ||| || | ||| | || || | | Sbjct 35275 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 35218 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | || || || || | || || || ||||| ||||| | || || | || |||| Sbjct 35217 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 35158 Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583 ||||||| || || ||| || || || | |||| || || ||||| ||||| Sbjct 35157 ACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 35102 Query 63584 AACATGTGCTGAGGTC 63599 | ||||||||| |||| Sbjct 35101 AGCATGTGCTGCGGTC 35086 >seq94 Length=311871 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 54643 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 54702 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-- 32825 || || ||||| || || || || || || || || | || | ||| || | || Sbjct 54703 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 54762 Query 32826 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 ||||| ||| ||||| | | ||||| ||||||||||| Sbjct 54763 GCGCTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTT 54804 >seq21 Length=367166 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 352224 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 352283 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 || || ||||| || || || || || || || || | || | ||| || | ||| Sbjct 352284 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 352343 Query 32828 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 || ||| | ||||| | | ||||| ||||||||||| Sbjct 352344 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 352385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629109054000