Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq74 98.7 1e-15
seq94 84.2 3e-11
seq21 84.2 3e-11
>seq74
Length=129003
Score = 98.7 bits (108), Expect = 1e-15
Identities = 361/556 (65%), Gaps = 16/556 (3%)
Strand=Plus/Minus
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| || |||| | || || || | ||| ||||| || || |||||||| || | ||
Sbjct 35633 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 35574
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 35573 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 35514
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
|| || | |||||||| || | ||| ||||| | | || || || ||||| |||||
Sbjct 35513 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 35454
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
||| || | ||| | || ||||| || || || | | ||| || || || || || ||
Sbjct 35453 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 35394
Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350
||| || || || || | ||| || || | || || || || || || || |
Sbjct 35393 -GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 35335
Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409
| || || |||||| | || ||||| | ||||| ||| || | ||| || |||||||||
Sbjct 35334 CGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 35276
Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 63467
|| || || ||| |||| || | | ||| || | ||| | || || | |
Sbjct 35275 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 35218
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527
| || || || || | || || || ||||| ||||| | || || | || ||||
Sbjct 35217 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 35158
Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583
||||||| || || ||| || || || | |||| || || ||||| |||||
Sbjct 35157 ACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 35102
Query 63584 AACATGTGCTGAGGTC 63599
| ||||||||| ||||
Sbjct 35101 AGCATGTGCTGCGGTC 35086
>seq94
Length=311871
Score = 84.2 bits (92), Expect = 3e-11
Identities = 117/162 (72%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || ||
Sbjct 54643 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 54702
Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-- 32825
|| || ||||| || || || || || || || || | || | ||| || | ||
Sbjct 54703 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 54762
Query 32826 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
||||| ||| ||||| | | ||||| |||||||||||
Sbjct 54763 GCGCTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTT 54804
>seq21
Length=367166
Score = 84.2 bits (92), Expect = 3e-11
Identities = 116/162 (72%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || ||
Sbjct 352224 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 352283
Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827
|| || ||||| || || || || || || || || | || | ||| || | |||
Sbjct 352284 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 352343
Query 32828 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
|| ||| | ||||| | | ||||| |||||||||||
Sbjct 352344 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 352385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633629109054000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |