Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq361 89.7 4e-13 seq144 87.8 2e-12 seq314 84.2 2e-11 seq3 82.4 6e-11 >seq361 Length=17270 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || |||||||| || || || || Sbjct 9278 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 9219 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| || || | || ||||||||||| || ||||| || ||| | || Sbjct 9218 CAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 9159 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| | ||||||||| Sbjct 9158 CTCGTGCTGCGTCTCCGCGGAGGT 9135 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || |||||||| || || || || Sbjct 8838 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 8779 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || || | || ||||||||||| || ||||| || ||| | || Sbjct 8778 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 8719 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| | |||||||| Sbjct 8718 CTCGTGCTGCGTCTCCGCGGAGG 8696 >seq144 Length=22955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || ||||| || || || | || || || || || Sbjct 71 AAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAG 130 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||| | ||||||||||||||||| ||||| ||| | || Sbjct 131 CAGCTTGAGGACGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCAC 190 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | |||||| | |||||||| || Sbjct 191 CTCGTTTTGAGGTTGCGCGGTGG 213 >seq314 Length=39162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGA-GGGTATTCCACCCGATCA 22337 || ||| | ||| | |||| || ||||| |||||||| ||| || || ||||| || Sbjct 38841 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCA 38900 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || | || || || ||||| ||| | ||||| ||||| || ||| ||||| Sbjct 38901 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 38960 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || || || | ||| | || ||| | |||||||| || Sbjct 38961 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 39008 >seq3 Length=57953 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 50562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 50621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| || || ||||| || Sbjct 50622 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 50681 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || | ||| || ||| | |||||| || || | || ||||||||| Sbjct 50682 CAGCGCTTGATCTTCG-CGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 50740 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || | || |||| | |||||||| Sbjct 50741 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGG 50787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726132866225