Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq74 271 1e-67 seq21 165 2e-35 seq94 161 2e-34 seq31 145 1e-29 >seq74 Length=129003 Score = 271 bits (300), Expect = 1e-67 Identities = 553/811 (68%), Gaps = 14/811 (2%) Strand=Plus/Minus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| ||| |||||||||||||||||||| || ||||||| |||||| ||||||| Sbjct 35825 GTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAC 35766 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910 | || |||||| | | || || || | || | | | ||||| |||||| Sbjct 35765 GGCGTACCAGAGCTTCTGGGCGGGGATGGTGC-GCTTGGCGCGACCCTCCTTCTCGTACT 35707 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 | || ||| ||||||| ||| ||||||||| || ||||| | |||| Sbjct 35706 TTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCG 35647 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 |||| | ||| ||| |||||| | || ||| | || |||||||||||||||||||| Sbjct 35646 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCC 35587 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 | ||||| ||| | ||| | | | ||| ||| ||| |||||| | || | Sbjct 35586 AAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 35527 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || | Sbjct 35526 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 35467 Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210 ||||||||||||||||||| || | | | |||| | | ||| || | || | Sbjct 35466 GCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGA 35407 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 |||||||| |||| |||||| ||||| |||||| | || | | | || |||| Sbjct 35406 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGT 35347 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || | ||| | ||||| || |||||||||||| ||||| |||||| |||| Sbjct 35346 GGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 35287 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| || ||| |||||| ||| || ||||| || || ||||| | Sbjct 35286 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 35227 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 | | || ||| | |||||| || || || ||||| |||||||| || ||| | Sbjct 35226 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACA 35167 Query 245451 GGAACCCGTACGTCTGGAGCAGAGC-GTCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508 || |||||||| || | | || ||| |||| ||||||||||| ||| | ||| | Sbjct 35166 TGAGGTTGTACGTCTCGATC-GCGCGGTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 35110 Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | | |||||| ||||||| || |||| | || ||| | | ||||| || Sbjct 35109 CGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 35053 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | || ||||||||||||||||| || ||||| Sbjct 35052 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 35022 Score = 174 bits (192), Expect = 3e-38 Identities = 616/945 (65%), Gaps = 78/945 (8%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || || ||||||| || ||| | |||||||||||||| |||||| Sbjct 36992 ACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTACATGCCCGTCTTG 36933 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | ||| ||| || |||||| | ||| |||| | ||| || Sbjct 36932 AGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT-----------GG 36884 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915 ||| | || | || || |||||| ||||| |||||||| ||| | |||| || || Sbjct 36883 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCGCGGTC 36826 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||| | | ||||| | |||| || || ||||| || | |||||||||||| |||| Sbjct 36825 GGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGATGCGCTT 36766 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 ||| | ||||||| || || |||||| | |||||| ||||| |||||| | | | Sbjct 36765 GAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTT 36706 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTT 244092 ||| |||||||||||||| ||| || | ||| ||| ||| ||| Sbjct 36705 CTTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 36649 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||| ||||| || | || |||||||| ||||| |||| || |||||| Sbjct 36648 GACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTC 36589 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC---GCAGTCGGCATGGGCG---A 244206 || ||| || ||| || ||||| || || || || || ||||| |||| | Sbjct 36588 GAACGCCTCGTTGAAGCCGAGGATCTG-GC--TGGTCGAGGCGGTAGGCATCGGCGCGCA 36532 Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTC 244266 ||| ||| || ||| | | ||||||| |||| | ||| ||| ||| | || Sbjct 36531 CACGAGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCT--TCTCCTTCAACTC 36484 Query 244267 CCACATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 | | || | |||||| ||| | ||| | ||||| || |||||| || || | Sbjct 36483 GGCCCAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGT 36425 Query 244326 TGCTGACGGG---GCTGC------CCTCGTAGGTCGGGTAGGGACCG---TCGC---GCT 244370 ||| |||| || || ||| ||| | |||||| ||| |||| | | Sbjct 36424 GGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGCCAGGGT 36365 Query 244371 GGGCCA--GCTTA-----CAGC--TCTCG---------TCGAGGGCGGCGTAGTAGATGG 244412 | || | || || ||| | ||| |||| ||||||| ||||| | Sbjct 36364 GCGCGATGGCGTAGTCGCGAGCCATGTCGCACGACGACTCGATCGCGGCGTGATAGATCG 36305 Query 244413 TCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATC 244471 ||||||||||| ||| | || ||| || | | || || ||| || | || | Sbjct 36304 TCTCGAAGATCTGGACGTTGAGGTGGCGCGCTTCAGGCG-AGTCGAACGGCAGGCGGAGG 36246 Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 ||||||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| Sbjct 36245 GCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTG 36186 Query 244532 GAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGG 244591 |||| ||| || |||||||| ||||| ||||||| | ||| |||||| Sbjct 36185 CTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAGGTTGTAC 36126 Query 244592 GTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 |||| | |||||||||| |||| || |||||||||||| Sbjct 36125 GTGACGACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 36081 >seq21 Length=367166 Score = 165 bits (182), Expect = 2e-35 Identities = 227/312 (73%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | ||||| || || || | ||||||||||||||||| ||||| Sbjct 352127 GAACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 352068 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG--GAGCGGGTCCGGGCCATCATCACGGAGGCC 42923 | |||||| || | |||||| || |||| | ||||||| ||||| Sbjct 352067 G---CACCTCGAGCGCC-GCCCTCACCCCCGACACGGTCGAGCGCATCATCCGCGAGGCG 352012 Query 42924 GTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 || ||||||||| | |||||||||||| || |||||||||| || ||||||||||| Sbjct 352011 GTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAAC 351952 Query 42984 CACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGG 43042 ||||||||||||| |||||||| ||| || ||||||| | | ||| || ||| Sbjct 351951 AGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGC 351892 Query 43043 TCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGA 43102 || | ||||| ||| | | ||| |||||||| ||||||| |||||| |||| Sbjct 351891 AACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 351833 Query 43103 GGGCAAGACCAA 43114 |||||||||||| Sbjct 351832 GGGCAAGACCAA 351821 Score = 152 bits (168), Expect = 1e-31 Identities = 141/176 (80%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691 || |||||| |||||||||| || |||||||||| ||||||| | |||| || | Sbjct 352397 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGA---CGACCGCTCC 352341 Query 42692 GT--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749 || |||||||| | || || || || ||||||||||||||||||||||||| ||| | Sbjct 352340 GTCTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCG 352281 Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 ||||| |||||||||||||||||| || | | ||||||||||||||||||||| Sbjct 352280 TTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 352225 >seq94 Length=311871 Score = 161 bits (178), Expect = 2e-34 Identities = 226/311 (73%), Gaps = 7/311 (2%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | ||||||||||||||||| ||||| Sbjct 54545 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 54486 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | |||||| || | |||||| || |||| | |||||| ||||| | Sbjct 54485 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGG 54430 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 | ||||||||| ||||||||||||| || |||||||||| || ||||||||||| Sbjct 54429 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACA 54370 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043 ||||||||||||| |||||||| ||| ||| || |||| || | | | || || Sbjct 54369 GCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCA 54310 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || | ||||| ||| | | ||| |||||||||||||| | |||||| ||||| Sbjct 54309 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 54251 Query 43104 GGCAAGACCAA 43114 ||||||||||| Sbjct 54250 GGCAAGACCAA 54240 Score = 152 bits (168), Expect = 1e-31 Identities = 141/175 (81%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||||| || |||||||||| |||||| | | | | ||| || Sbjct 54816 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 54759 Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | |||||||| | || || || || ||||||||||||||||||||||||| ||| | | Sbjct 54758 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 54699 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 |||| |||||||||||||||||| || | | ||||||||||||||||||||| Sbjct 54698 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 54644 >seq31 Length=506143 Score = 145 bits (160), Expect = 1e-29 Identities = 227/315 (72%), Gaps = 15/315 (5%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | ||||| || || || | ||||||||||||||||| ||||| Sbjct 246964 GAACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 246905 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCA--TCATCACGGAGGCC 42923 | |||||| || | || || | || ||| | ||| ||||| | || ||| Sbjct 246904 G---CACCTCGAGCGCCGACCAGCGCCTCACCGCGTC--GCCCAAATCATCGCCGAAGCC 246850 Query 42924 GTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 || ||||||||| |||| ||||| ||| | | ||||||| | || |||||||||| Sbjct 246849 GTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAA- 246791 Query 42984 CACGA-CCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGG 43041 | ||| ||||||| | |||||||| ||| |||||| |||| || | ||| | ||| Sbjct 246790 CGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGG 246731 Query 43042 GTCTCAGCCGCCTCTACAACACGCCGTG--CCCCTTCGACTTTATGGAGAACATCTCGTT 43099 | || | || |||| | |||| | ||| |||||||||||||||| |||||| | Sbjct 246730 GAACGAGAAG-CTGTACA--ATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGAT 246674 Query 43100 GGAGGGCAAGACCAA 43114 ||||||||||||||| Sbjct 246673 GGAGGGCAAGACCAA 246659 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| || |||||||| |||||| | || ||| | Sbjct 247195 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTG 247136 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | ||||| || || |||| |||||||||||||||||||| ||| | ||| Sbjct 247135 TTTGCGGAACGACTGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 247076 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 ||||| ||||||||||| || || | | ||||||||| | || ||||| Sbjct 247075 GCCTCGATCTTCTGGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTCTC 247023 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || |||||||| ||||| |||||| ||| |||||| | Sbjct 247522 CTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCG 247463 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||||||| ||||||||||| |||||||| |||||||| Sbjct 247462 GCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 247416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334891452400