Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq314 116 9e-21
seq3 100 7e-16
seq94 98.7 2e-15
seq222 95.1 3e-14
seq144 86.0 1e-11
seq188 84.2 5e-11
>seq314
Length=39162
Score = 116 bits (128), Expect = 9e-21
Identities = 167/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| | || | || ||||| | || || || ||||| || ||||
Sbjct 39012 CATG-CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGT 38954
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| ||||||||| ||||| || | || || || |||||||||| ||||| ||
Sbjct 38953 CGCTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGG 38894
Query 288362 CTGGGATTCCT-TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
|||||||| || || ||||| || || || || ||||| || || | || ||
Sbjct 38893 GAGGGATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGAC 38834
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 38833 TCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781
>seq3
Length=57953
Score = 100 bits (110), Expect = 7e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| || |||||||| | || ||||| |||| || || || ||||| || || |
Sbjct 50791 CATG-CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAAT 50733
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || || || || | || || || |||||||||| ||||| ||
Sbjct 50732 CCGAAAGAGTACGACCATCCTCGAGCTGCTTCCC-GCGAAGATCAAGCGCTGCTGGTCGG 50674
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || || ||||| || || || || || || || || | || ||| |
Sbjct 50673 GAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACT 50614
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || ||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 50613 CAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 50562
>seq94
Length=311871
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| || || || | ||| || || || || ||||||||| |
Sbjct 106362 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 106303
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || |||||||||| ||||| || | ||
Sbjct 106302 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 106243
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || || || ||||| || || | ||| ||| || ||
Sbjct 106242 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 106183
Query 288427 TCGAGCGTGATC 288438
||||| ||||||
Sbjct 106182 TCGAGGGTGATC 106171
>seq222
Length=17200
Score = 95.1 bits (104), Expect = 3e-14
Identities = 183/267 (69%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 326077 GTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACC 326136
||||| ||||||||||| ||||| || |||||| ||| ||||| || ||
Sbjct 13617 GTCGGCCATGATCATCAGGCTGCCGTAGCGGAGCGAGTCGGTGCTCGTGTACGTCTTGCC 13558
Query 326137 GGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGC---T 326193
|| | ||| | || || |||| ||| ||| || |||||| || || || |
Sbjct 13557 CTGCTGCAAGCCCATGATCTGCTTGATCGCCTGGATCTCGGCGTTCT-CGAGAAGCGCCT 13499
Query 326194 TGCCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 326253
|||| || ||| ||||| ||||| | || ||||| || || ||||| || || || |
Sbjct 13498 TGCC--GGTTGCCTCGCGAACGTTGAGGAGCTTTCCGCGGAGCGGGAAGACACCGTAGTT 13441
Query 326254 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 326313
||||||||||| |||| || || | || || || | | || || || ||||| ||
Sbjct 13440 GTCGCGACCGACGACGGCGAGACCCGAGACGGCGAGCGCCTTGGCCGAGTCTCCCTCGGT 13381
Query 326314 CAGAATGAGAGTGCACATTTTGCTGTT 326340
||| ||||| |||||| | |||| |||
Sbjct 13380 CAGGATGAGCGTGCACTTGTTGCCGTT 13354
>seq144
Length=22955
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
||| ||||||||| | || | ||||| || | || ||| ||||| || || || |
Sbjct 218 CATTTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAAT 159
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| |||||||||||||| || | || || || |||||||||| ||||| ||
Sbjct 158 CTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGG 99
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || || ||||| || || || || ||||| || || | ||| ||| |
Sbjct 98 GCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACT 39
Query 288422 CTACTTCGAGCGTGATC 288438
| || ||||| ||||||
Sbjct 38 CGACCTCGAGGGTGATC 22
>seq188
Length=518690
Score = 84.2 bits (92), Expect = 5e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTA 325402
||||| || ||||| | | || |||||||||||| | ||| | | |||||||||
Sbjct 347620 TCCTTGCCGCCCTGGAGACGCGTACCGAACTGGCCGTTCGGGTCGAGCACGTTGATGTTG 347679
Query 325403 TTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCA 325462
||||| |||||| | | ||| || ||| |||||||| || ||||| || || |||||
Sbjct 347680 TTGCTGCCGACAAAGTTCTGCGCGAGGCCGACGATGGTGCCCTGCAGCGAGGCGTCGCCG 347739
Query 325463 TGGTGATAGGC 325473
||||| || ||
Sbjct 347740 TGGTGGTACGC 347750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179648883272470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |