Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq31 116 8e-21 seq222 91.5 3e-13 seq188 87.8 4e-12 seq1 87.8 4e-12 >seq31 Length=506143 Score = 116 bits (128), Expect = 8e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 243499 CAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGC 243558 ||||||||| | ||||| || || | ||| |||||||| | ||||| | || | Sbjct 246867 CAAATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCC-GT 246809 Query 243559 CGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCG 243617 |||||| || ||||||||| | |||||| ||||||||||||| ||||| || ||||| Sbjct 246808 CGGCTTGATCGGCATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCG 246749 Query 243618 CATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTAT 243677 | | |||||||||| | ||||| ||||||| || ||||||| || | |||||| Sbjct 246748 ATTGCTTGTCGCGCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTAT 246689 Query 243678 GGAGCTCATTTCG 243690 |||| | || ||| Sbjct 246688 GGAGATGATCTCG 246676 >seq222 Length=17200 Score = 91.5 bits (100), Expect = 3e-13 Identities = 182/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 298198 GTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACC 298257 ||||| ||||||||||| ||||| || |||||| ||| ||||| || || Sbjct 13617 GTCGGCCATGATCATCAGGCTGCCGTAGCGGAGCGAGTCGGTGCTCGTGTACGTCTTGCC 13558 Query 298258 GGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGC---T 298314 || | ||| | || || |||| ||| ||| || |||||| || || || | Sbjct 13557 CTGCTGCAAGCCCATGATCTGCTTGATCGCCTGGATCTCGGCGTTCT-CGAGAAGCGCCT 13499 Query 298315 TGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 |||| || ||| ||||| || || | || ||||| || || ||||| || || || | Sbjct 13498 TGCC--GGTTGCCTCGCGAACGTTGAGGAGCTTTCCGCGGAGCGGGAAGACACCGTAGTT 13441 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 ||||||||||| |||| || || | || || || | | || || || ||||| || Sbjct 13440 GTCGCGACCGACGACGGCGAGACCCGAGACGGCGAGCGCCTTGGCCGAGTCTCCCTCGGT 13381 Query 298435 CAGAATGAGAGTGCACATTTTGCTGTT 298461 ||| ||||| |||||| | |||| ||| Sbjct 13380 CAGGATGAGCGTGCACTTGTTGCCGTT 13354 >seq188 Length=518690 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||| || || || || || || ||||| || ||||| | | || ||||||| Sbjct 347590 TTCGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAAC 347649 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 ||||| | ||| | | ||||||||| ||||| |||||| | | ||| || ||| Sbjct 347650 TGGCCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCG 347709 Query 297554 ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC 297594 |||||||| || ||||| || || ||||| ||||| || || Sbjct 347710 ACGATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGC 347750 >seq1 Length=1779505 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 |||||||| || || | ||||||||| | || |||||||| || || || || |||| Sbjct 1667188 GAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGTCGACTTGCCCGAT 1667247 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAG 334279 ||||| | ||||| ||||||||||||| ||||||||| || Sbjct 1667248 CCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 1667288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874842312750