Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq314 96.9 4e-15 seq98 91.5 2e-13 seq144 89.7 6e-13 seq94 89.7 6e-13 >seq3 Length=57953 Score = 107 bits (118), Expect = 2e-18 Identities = 142/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| | ||||| || | || || |||||||| || ||||| Sbjct 50752 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCC-GCGAA 50694 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||||||| || | || |||||||||| ||| | || | |||| Sbjct 50693 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 50635 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || |||| |||||||| ||||| || || ||||| | Sbjct 50634 TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 50575 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 50574 CGAAGATCTGCAT 50562 >seq314 Length=39162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||| ||| | ||| |||||| || || ||||| || || || || |||| Sbjct 38994 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 38935 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCA-CGCTCTCCTTGT 42114 || |||||||| || ||||| || | ||||||||||||| || | | |||||||| Sbjct 38934 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTTGT 38875 Query 42115 CCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| | || | |||| ||| | | | ||||| || || || |||| ||||| Sbjct 38874 CC-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 38817 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || || ||||| || ||||| ||||| Sbjct 38816 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 >seq98 Length=54307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || || Sbjct 35379 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 35438 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 35439 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 35497 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | | |||||| ||| || || |||| ||||| Sbjct 35498 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 35534 >seq144 Length=22955 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||| || || || |||| || |||||||| || ||||| Sbjct 177 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 118 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | ||||||||||||| || | || |||||||||| ||| | || | |||| ||| Sbjct 117 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 60 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | | ||||||| ||| || || |||| ||||| Sbjct 59 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 23 >seq94 Length=311871 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||| | || | || ||| || || || |||||||| | Sbjct 106053 ACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 105994 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || |||||||| || ||||| ||||| ||||||||||||| || Sbjct 105993 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 105934 Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124 | || |||||||||| ||| || Sbjct 105933 GATGCCCTCCTTGTCCTGGATCTT 105910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210321591600