Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq314 96.9 3e-15
seq144 96.9 3e-15
seq94 96.9 3e-15
seq3 96.9 3e-15
seq111 91.5 1e-13
seq98 91.5 1e-13
seq361 87.8 2e-12
>seq314
Length=39162
Score = 96.9 bits (106), Expect = 3e-15
Identities = 159/228 (70%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| |||||||| || | ||| ||||| | || || || || || |||||||| || |
Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 38949
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| |||| |||||||||||||| || | || | |||||||||||||||||
Sbjct 38948 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 38889
Query 64337 ATT-CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| || || | || || | || ||
Sbjct 38888 ATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 38829
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||| | || || ||||| || |||||
Sbjct 38828 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781
>seq144
Length=22955
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| |||||||| || | || || || | |||||||| ||||||||||||||||||
Sbjct 213 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGA 154
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| |||| ||||||||||| || || | || | |||||||||||||| ||
Sbjct 153 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 94
Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || || || || ||
Sbjct 93 ATGCCCTCCTTGTCCTGAATCTT 71
>seq94
Length=311871
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | | |||||| || || | |||||| || || |||||||| || || |
Sbjct 106362 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 106303
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| |||| ||||||||||||||||| | || | ||||||||||| || |||
Sbjct 106302 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 106243
Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || || || || ||
Sbjct 106242 ATGCCCTCCTTGTCCTGAATCTT 106220
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| || || | ||||| ||||| || ||||||||||| |
Sbjct 106053 ACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 105994
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || |||| || |||||||| || || | ||||| |||||||||||||||||
Sbjct 105993 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 105934
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || || || || ||
Sbjct 105933 GATGCCCTCCTTGTCCTGGATCTT 105910
>seq3
Length=57953
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | | |||||| || || | ||| || ||||| || |||||||||||||
Sbjct 51333 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 51274
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| |||| ||||||||||| || || | || | |||||||||||||||||
Sbjct 51273 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 51214
Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || || || || ||
Sbjct 51213 ATACCCTCCTTGTCCTGGATCTT 51191
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/214 (70%), Gaps = 5/214 (2%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || |||| ||||| || || || ||||||||||| | | || || | ||
Sbjct 50772 AGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCC 50713
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | || | ||||||||||||||||| || || || || ||
Sbjct 50712 TCGAGCTGCTT-CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 50654
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409
|| || || ||| ||| || | || | ||| || || || || | || | ||
Sbjct 50653 TGAATCTTGGCCTTGACATTGTCGATCGTGT--CCGACGACTCAACCTCGAGGGTGATGG 50596
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||||| | || || ||||| || |||||
Sbjct 50595 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 50562
>seq111
Length=69946
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|||||||| | | | || ||||||| ||||| || |||||| ||||| ||| ||
Sbjct 54376 CCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTCG 54317
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| ||| || |||||||| || || | |||||||||||||||||||||||
Sbjct 54316 AGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGG 54257
Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || || || || ||
Sbjct 54256 ATGCCCTCCTTGTCCTGGATCTT 54234
>seq98
Length=54307
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| ||||| || || ||||||||||| || | | ||||| ||||
Sbjct 35359 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 35418
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||||||| | ||||| ||||||||||| || || || || || || ||
Sbjct 35419 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 35478
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 35479 TGGATCTT 35486
>seq361
Length=17270
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | ||||| ||||| || ||||||||||| | | || || ||||
Sbjct 8711 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 8770
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | || || ||||||||||||||||| ||||| || || ||
Sbjct 8771 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 8830
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 8831 TGGATCTT 8838
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| || || | ||||| ||||| || ||||||||||| |
Sbjct 9135 ACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 9194
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || |||||||| || || | || || |||||||||||||||||
Sbjct 9195 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 9254
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
||||| || || || || || ||
Sbjct 9255 GATTCCCTCCTTGTCCTGGATCTT 9278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499642520370600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |