Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq74 122 9e-23 seq21 104 2e-17 seq94 100 3e-16 seq314 91.5 1e-13 >seq74 Length=129003 Score = 122 bits (134), Expect = 9e-23 Identities = 301/446 (67%), Gaps = 17/446 (4%) Strand=Plus/Minus Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGC 154077 |||||||||||||||| || || | ||||| ||| | || || ||||| || | Sbjct 35514 AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTC 35455 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 |||| ||||||| |||| || | |||||| | ||||| | |||||| | |||| | | Sbjct 35454 CCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCG 35395 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197 | |||||| || ||| | ||| ||||| | | || | | || Sbjct 35394 AGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 35335 Query 154198 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCC 154255 | |||||||| ||||| ||| || ||| ||||| ||| ||||| ||||||||| Sbjct 35334 CGATGCCGCCTGCCGT-CTTGGAGATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCC 35277 Query 154256 GTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCG-CG 154314 ||||| ||||| | || | ||| ||||| | | ||||| |||| || Sbjct 35276 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCG 35218 Query 154315 TTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGG 154373 | || || ||||| || || |||||||||||| | |||| |||| || Sbjct 35217 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAG----TACCGCTCCGACATGAGG 35162 Query 154374 T---ACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATG 154430 | |||| ||||| ||| || || || |||||||| ||||||| ||||||||||||| Sbjct 35161 TTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATG 35102 Query 154431 AGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||| || ||||| || Sbjct 35101 AGCATGTGCTGCGGTCGCTCGGCCAC 35076 >seq21 Length=367166 Score = 104 bits (114), Expect = 2e-17 Identities = 216/312 (69%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || |||||||||||||| || ||||| |||||||| |||||| || | Sbjct 352126 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 352069 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | |||||| || | |||| || |||||||| Sbjct 352068 -CGCACCTCGAGCGCCGCCCTCACCCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGT 352010 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680 | ||||| | ||||| | |||| |||||||| ||| |||| | ||||||||| | Sbjct 352009 CGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAG 351950 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGG 52739 || || |||||| |||||||||||||||| || || || || ||| ||| || || Sbjct 351949 CGACCTC-ATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCA-CT-TGG 351893 Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | ||| || | || || ||||| || || ||| | | || ||| | || Sbjct 351892 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 351833 Query 52799 GGGCAAGACCAA 52810 |||||||||||| Sbjct 351832 GGGCAAGACCAA 351821 >seq94 Length=311871 Score = 100 bits (110), Expect = 3e-16 Identities = 216/312 (69%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || ||||||||||| || || ||||| |||||||| |||||| || | Sbjct 54544 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 54487 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | || ||| || | |||| | |||||||| Sbjct 54486 -CGCACCTCGAGCGCCGCCCTC-ACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGGT 54429 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680 | ||||| ||||||| | || | |||||||| ||| |||| | ||||||||| | Sbjct 54428 CGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAG 54369 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGG 52739 || || |||||| ||||||||||||| ||||| || || || || ||| ||| || Sbjct 54368 CGACCTC-ATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCA-CTC-GG 54312 Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | ||| || | || || ||||| || |||||| ||| || ||| | || Sbjct 54311 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGA 54252 Query 52799 GGGCAAGACCAA 52810 |||||||||||| Sbjct 54251 GGGCAAGACCAA 54240 >seq314 Length=39162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| | ||| || | ||| | | |||||||| || |||||||||||||| Sbjct 39009 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 38950 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| || || || || | |||| | ||||| ||||| ||||| Sbjct 38949 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 38890 Query 138507 TA-TACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563 | | || || ||||| ||| | || | || | ||| || | |||||| | ||||| Sbjct 38889 GATTCCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTC 38832 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||||| || | || || || || || || || || || |||||||||| Sbjct 38831 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 38779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260135802800