Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq314 163 3e-35 seq3 122 8e-23 seq144 105 6e-18 seq31 105 6e-18 seq94 104 2e-17 seq74 87.8 2e-12 seq142 86.0 6e-12 seq361 84.2 2e-11 seq111 84.2 2e-11 >seq314 Length=39162 Score = 163 bits (180), Expect = 3e-35 Identities = 177/231 (77%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || | |||||||| ||| | |||||||| || || || ||||| |||| Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 38949 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 38948 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 38889 Query 127007 ATGCCC-TCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || ||| ||||||||| || || ||||| |||| |||| |||||||| | ||||| Sbjct 38888 ATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGA 38830 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 | |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 38829 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 38779 >seq3 Length=57953 Score = 122 bits (134), Expect = 8e-23 Identities = 165/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || ||||| || || || |||||||| Sbjct 50787 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 50728 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 50727 AGAGTACGACCATCCTCGAGCTGCTTCCC-GCGAAGATCAAGCGCTGCTGGTCGGGAGGG 50669 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| ||||||| ||| || Sbjct 50668 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 50609 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 50608 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 50560 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | ||||| || | |||||||||||| || || |||||||| Sbjct 51334 TCCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGA 51275 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 51274 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 51215 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || |||||||||||| ||| || ||||| Sbjct 51214 GATACCCTCCTTGTCCTGGATCTTAGCCTTGA 51183 >seq144 Length=22955 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| || | ||| || | || | || || || |||||||| |||||||| Sbjct 214 TCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTG 155 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 154 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGG 95 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || || ||||| |||| |||| ||||| | ||||| Sbjct 94 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 36 Query 127065 CTTCGACGGT 127074 | |||| ||| Sbjct 35 CCTCGAGGGT 26 >seq31 Length=506143 Score = 105 bits (116), Expect = 6e-18 Identities = 213/315 (68%), Gaps = 17/315 (5%) Strand=Plus/Minus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC--- 47300 |||||||| |||||| | ||||||||||| |||||| |||||||||| ||| || | Sbjct 246963 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 246904 Query 47301 -AACACTAGAGTCGATCAAAAGTTGGACGTGCC-CACCG--TCAGCGACATGTTTGCCGA 47356 | | | || | ||| || | ||| ||||| || | | || | ||||| Sbjct 246903 CACCTCGAGCGCCGACCA----------GCGCCTCACCGCGTCGCCCAAATCATCGCCGA 246854 Query 47357 AGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAAT 47416 |||||||| || ||| ||| || | | || || |||||| || | || || Sbjct 246853 AGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCAT 246794 Query 47417 GAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCT 47476 ||||||| | ||| || |||||||||| || ||||| ||||| |||| || ||| Sbjct 246793 GAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCT 246734 Query 47477 AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536 | | ||| | ||| | ||||||| || ||||| |||||| | | || ||| | Sbjct 246733 TGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGAT 246674 Query 47537 CGAGGGCAAGACCAA 47551 |||||||||||||| Sbjct 246673 GGAGGGCAAGACCAA 246659 >seq94 Length=311871 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| || || |||| Sbjct 106362 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 106303 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 106302 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 106243 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| ||||| | |||||| Sbjct 106242 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGAC 106184 Query 127066 TTCGACGGT 127074 |||| ||| Sbjct 106183 CTCGAGGGT 106175 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || |||||||| Sbjct 106052 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 105993 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || ||| |||| | |||||||| |||||||| Sbjct 105992 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 105933 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||||||||| ||| || Sbjct 105932 ATGCCCTCCTTGTCCTGGATCTT 105910 >seq74 Length=129003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| |||||| | || ||| | ||||||| ||||| |||||||||||||| ||||| Sbjct 36678 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCG 36619 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | || | |||| ||| |||||||||||| ||||||| ||||| ||||| Sbjct 36618 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCT 36559 Query 146157 CGTCGTAGCGGTAGGCAT 146174 |||| ||||||||||| Sbjct 36558 GGTCGAGGCGGTAGGCAT 36541 >seq142 Length=61482 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || | || ||||| ||||| | | |||| ||| || || || || || Sbjct 3758 CGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCC 3817 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| ||||||| |||||||| ||||| || ||||||||||||||| | | || ||| Sbjct 3818 TGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTT 3877 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGA 127070 || | | || ||||||| |||||| |||| Sbjct 3878 GACGTCGTAGATTGTGTCCGACGACTCGACCTCGA 3912 >seq361 Length=17270 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || |||||||| Sbjct 9136 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 9195 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || || ||| |||| | |||||||| |||||||| Sbjct 9196 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 9255 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || |||||||||||| ||| || ||||| Sbjct 9256 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 9286 >seq111 Length=69946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||||| ||||| || | ||| | || || || |||||| ||||| || Sbjct 54379 GCGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCT 54320 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | |||||| || || ||||| || || ||| | || | |||||||| |||||| Sbjct 54319 TCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGA 54260 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || ||||||||||||||| ||| || ||||| Sbjct 54259 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 54226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498630527600