Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq314 114 1e-20
seq94 100 3e-16
seq144 93.3 4e-14
seq3 91.5 1e-13
>seq314
Length=39162
Score = 114 bits (126), Expect = 1e-20
Identities = 167/232 (72%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| | ||||||||| ||||| || || || ||||| ||||| || || |||
Sbjct 39011 ATGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCG 38952
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|||| || | || || | || || || ||| | ||||| || |||||||| ||
Sbjct 38951 CTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 38892
Query 45231 GGAATGCCT-TCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288
|| || || || || || ||||| || |||| || | || | |||||| |||||||
Sbjct 38891 GGGATTCCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACT 38833
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| ||||| || | || |||||||| || || || || || || |||||
Sbjct 38832 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781
>seq94
Length=311871
Score = 100 bits (110), Expect = 3e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| |||||||| | | ||| || |||||||| || ||||| || || ||||| ||||||
Sbjct 106362 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 106303
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || || || | || || || ||| | ||||| || |||||||| ||||||
Sbjct 106302 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 106243
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || || || ||||| || |||| || | || | |||||||| ||||||||
Sbjct 106242 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGAC 106184
Query 45293 TTCGAGAGT 45301
||||| ||
Sbjct 106183 CTCGAGGGT 106175
>seq144
Length=22955
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171
|||| ||||| | |||||| || || ||||| || ||||||||||| || || |||||
Sbjct 215 TTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATC-T 157
Query 45172 TGACG-GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
||| | || || || | || || || ||| | ||||| || |||||||| |||
Sbjct 156 TGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGC 97
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || ||||| || |||| || | || | |||||||| |||||
Sbjct 96 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTC 38
Query 45290 GACTTCGAGAGT 45301
||| ||||| ||
Sbjct 37 GACCTCGAGGGT 26
>seq3
Length=57953
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/230 (69%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||||||||| | || ||| || || || || || ||||| ||||| || |||||
Sbjct 50790 ATGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCC 50731
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | || |||| ||| | ||||| || |||||||| ||
Sbjct 50730 GAAAGAGTACGACCATCCTCGAGCTG-CTTCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 50672
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || || || ||||| || |||| || | ||||| || |||||
Sbjct 50671 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCA 50612
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | || |||||||| || || || || || || |||||
Sbjct 50611 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 50562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452001137735400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |