Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq314 114 1e-20 seq94 100 3e-16 seq144 93.3 4e-14 seq3 91.5 1e-13 >seq314 Length=39162 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| | ||||||||| ||||| || || || ||||| ||||| || || ||| Sbjct 39011 ATGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCG 38952 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| || | || || | || || || ||| | ||||| || |||||||| || Sbjct 38951 CTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 38892 Query 45231 GGAATGCCT-TCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 || || || || || || ||||| || |||| || | || | |||||| ||||||| Sbjct 38891 GGGATTCCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACT 38833 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| ||||| || | || |||||||| || || || || || || ||||| Sbjct 38832 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 >seq94 Length=311871 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || |||||||| || ||||| || || ||||| |||||| Sbjct 106362 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 106303 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | ||||| || |||||||| |||||| Sbjct 106302 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 106243 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || ||||| || |||| || | || | |||||||| |||||||| Sbjct 106242 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGAC 106184 Query 45293 TTCGAGAGT 45301 ||||| || Sbjct 106183 CTCGAGGGT 106175 >seq144 Length=22955 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| ||||| | |||||| || || ||||| || ||||||||||| || || ||||| Sbjct 215 TTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATC-T 157 Query 45172 TGACG-GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 ||| | || || || | || || || ||| | ||||| || |||||||| ||| Sbjct 156 TGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGC 97 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || ||||| || |||| || | || | |||||||| ||||| Sbjct 96 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTC 38 Query 45290 GACTTCGAGAGT 45301 ||| ||||| || Sbjct 37 GACCTCGAGGGT 26 >seq3 Length=57953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | || ||| || || || || || ||||| ||||| || ||||| Sbjct 50790 ATGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCC 50731 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || |||| ||| | ||||| || |||||||| || Sbjct 50730 GAAAGAGTACGACCATCCTCGAGCTG-CTTCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 50672 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || ||||| || |||| || | ||||| || ||||| Sbjct 50671 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCA 50612 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || |||||||| || || || || || || ||||| Sbjct 50611 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 50562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001137735400