Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq74 179 5e-40 seq170 105 8e-18 seq46 96.9 4e-15 >seq74 Length=129003 Score = 179 bits (198), Expect = 5e-40 Identities = 488/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Minus Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||||||||||||||| | || | |||||||| |||| || ||| | || | | Sbjct 35818 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 35759 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | || | ||| || | ||| ||||| || ||||||| |||||||||| | Sbjct 35758 CAGAGCTTCTG-GGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 35700 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 ||| ||| ||||| || || |||| ||| || || |||| | || ||||| Sbjct 35699 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 35640 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 ||| | ||| | || || ||| || |||| |||||||||||| |||||||| || || Sbjct 35639 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 35580 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 |||| | || || ||| | || || | || || || || | || | || Sbjct 35579 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 35520 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACG 116906 || | ||| || ||||||||||| || ||||| | |||| | ||| ||| Sbjct 35519 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 35460 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 || |||||| || || | |||||| ||| | ||||| ||||| || ||||| || Sbjct 35459 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 35400 Query 116967 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATG 117024 | || | ||| || || || ||| ||||| || | | || | || | |||||| Sbjct 35399 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGGATC 35342 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | || || || |||||| ||| ||||| | |||||| | |||| || ||||| Sbjct 35341 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 35282 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || ||||||||||| |||| | | || ||||||||| ||| | || || Sbjct 35281 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 35222 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 117203 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 35221 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 35163 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 | ||| ||||| | | | |||||| || ||||| || |||| | ||| ||||| Sbjct 35162 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 35103 Query 117264 AAACATGTATTGGGGT 117279 | ||||| || ||| Sbjct 35102 GAGCATGTGCTGCGGT 35087 >seq170 Length=155406 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 10711 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770 || |||||| |||| || | |||||||||||||| |||||||| || | ||||||| Sbjct 96084 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 96143 Query 10771 CTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 10830 | | | ||||| || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 96144 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 96203 Query 10831 GTCAGGGAGTTCGTTGAG 10848 ||| | |||||||| ||| Sbjct 96204 GTCCGCGAGTTCGTCGAG 96221 >seq46 Length=135777 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGCAA 12930 ||| |||| |||||||| ||||| ||||| | ||| ||||| || ||| || | Sbjct 482 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 423 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | ||| | || || || | ||||||||||||| || |||||||| || || | || Sbjct 422 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 364 Query 12991 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 | |||| || |||||||||| || ||| || ||| | ||| ||||||||| | Sbjct 363 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 304 Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 |||| || || || || || | ||| | ||| || || |||||| ||||||| Sbjct 303 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504400873400