Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq74 122 1e-22 seq94 118 2e-21 seq21 111 3e-19 >seq74 Length=129003 Score = 122 bits (134), Expect = 1e-22 Identities = 332/499 (67%), Gaps = 16/499 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || ||||||| |||||| ||||||| | | | | || ||||||||||| Sbjct 36999 CTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTACATGCC 36940 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || || |||| ||| ||||| | |||||| || | || | || | | || Sbjct 36939 CGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 36880 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 | | ||| | ||| || ||||| ||||||||| || ||||| || || |||| Sbjct 36879 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATG-AACGCGCCGCGGTCGGCGG 36821 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG- 204076 | | | ||| | | ||| ||||| ||||||||||| |||||| | | | | || | | Sbjct 36820 CGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGATG-CGCTTGAGC 36762 Query 204077 -TGTTGAGGCACAT-CTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 || | || || | |||| || |||||||||||||| || || | | || Sbjct 36761 TCGTCGGGG---ATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 36705 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || || | || ||||| ||| || || || || | || |||||||| | Sbjct 36704 TTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACG 36645 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || |||| || || | |||||| | | |||| ||| | || |||||| Sbjct 36644 ACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAAC 36585 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC---CAGGAGC 204310 ||||||||| ||||| ||||| ||| ||| || ||||| || || || |||| Sbjct 36584 GCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCACACGAGC 36525 Query 204311 AGGGAGTTGCGCACACCGT 204329 |||||||| | |||| Sbjct 36524 ---GAGTTGCGGATGCCGT 36509 Score = 105 bits (116), Expect = 1e-17 Identities = 351/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 |||||| || |||||| |||||| ||| | | |||| || || || | | | || Sbjct 35609 CTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTC 35550 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| | ||| || || || | |||||||||||||||||||| | Sbjct 35549 CTTGCCGTGGTTCTTGCGGAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCACGGCTCGA 35491 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||| || | |||||| || |||||||| || ||| | | | Sbjct 35490 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGT 35431 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| | || || ||||| || | | ||||| | | |||||||||| | |||| Sbjct 35430 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 35371 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 ||| || || | | |||| ||| | ||| || ||||| | ||||| || Sbjct 35370 ACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGA 35311 Query 205464 TCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 | | |||||| ||||| || ||| ||||||||| |||| || |||||| || || Sbjct 35310 TGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 35252 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----GTGCCCGCGTGGAAGAGCGTGGG 205578 || || ||||||| | |||| || | || ||||| |||| ||||||||| || Sbjct 35251 ACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGG 35196 Query 205579 GCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCT 205634 ||||| | ||| | ||||| ||| |||| ||||| | | ||| | Sbjct 35195 CGACGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGT 35140 Query 205635 CCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | | ||| |||||| || || | |||| | ||||| | ||| || |||| ||| Sbjct 35139 CAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTC 35082 >seq94 Length=311871 Score = 118 bits (130), Expect = 2e-21 Identities = 214/312 (69%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721 ||||||||||||||||| || || ||||| || |||| ||||||| | ||| ||| Sbjct 54240 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 54299 Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781 |||| ||||| || ||||| | ||||||||| || |||||||| ||| Sbjct 54300 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 54359 Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841 || | || | ||| || || | ||| | ||||| ||||| || | || ||||||| | Sbjct 54360 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 54419 Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG----TACCCCGGCTTGCC 159897 || ||||||||||| ||| | || || ||| |||| | |||| || Sbjct 54420 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGCGGC--GCT 54477 Query 159898 CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGA 159957 | | ||| | || |||||||| ||||||||| ||| || |||||||| || || Sbjct 54478 C-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGA 54532 Query 159958 GATGAACTCGTT 159969 ||||| |||||| Sbjct 54533 GATGAGCTCGTT 54544 >seq21 Length=367166 Score = 111 bits (122), Expect = 3e-19 Identities = 215/314 (68%), Gaps = 14/314 (4%) Strand=Plus/Plus Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721 ||||||||||||||||| || || |||||||| |||| ||||||| | ||| ||| Sbjct 351821 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGTTCTCCTTGTGGTAG 351880 Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781 |||| || || || | ||||| | ||| || ||||| |||||||| ||| Sbjct 351881 ATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGGCAC 351940 Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841 || | || | ||| || || | ||| | ||||| ||||| |||| || ||||| | | Sbjct 351941 ATGAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTCTTGC 352000 Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TCG-----TACCCCGGCTTG 159895 || ||||||||||| ||| | || || ||| ||| ||| | |||| | Sbjct 352001 TCGATCTCGACCGCCTCGCGGATGATGCGCTCGAC-CGTGTCGGGGGTGAGGGCGGC--G 352057 Query 159896 CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGA 159955 | | | ||| | || |||||||| ||||||||| ||| || || ||||| || Sbjct 352058 CTC-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGC 352112 Query 159956 GAGATGAACTCGTT 159969 ||||||| |||||| Sbjct 352113 GAGATGAGCTCGTT 352126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151572104400