Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq314 105 2e-17
seq3 105 2e-17
seq361 104 6e-17
seq98 98.7 2e-15
seq94 98.7 2e-15
>seq314
Length=39162
Score = 105 bits (116), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
|||| || || ||||| || |||||||| |||| ||||||||| | || | ||
Sbjct 38996 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 38937
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATT--CCTTCTC 199532
|| || |||||||| || |||||||| | ||||||||||| ||| ||| ||| ||
Sbjct 38936 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTT 38877
Query 199533 GCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592
| ||||||||||| ||| ||| |||| |||||| | | || || || | ||||
Sbjct 38876 G-TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGA 38818
Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| ||||| || ||||| || || || || || ||
Sbjct 38817 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 38784
>seq3
Length=57953
Score = 105 bits (116), Expect = 2e-17
Identities = 155/218 (71%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| || ||||||||||| |||| |||||| || | | |||
Sbjct 50781 CGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTA 50722
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||| |||| |||||||| | ||||||||||| ||| || ||
Sbjct 50721 CGACCATCCTCGAGCTGC-TTCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCC 50663
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| || |||| ||||| | | || || || |
Sbjct 50662 TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGG 50603
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || || || || ||
Sbjct 50602 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 50565
>seq361
Length=17270
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || |||||||| |||||||| || |||| |||||| || | | |||
Sbjct 9142 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 9201
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || |||||||| |||||||||||||| ||| |||||
Sbjct 9202 CGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCC 9261
Query 199529 TCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 9262 TCCTTGTCCTGGATCTT 9278
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || |||||||| |||||||| || |||| |||||| || | | |||
Sbjct 8702 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 8761
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || |||||||| |||||||||||||| ||| |||||
Sbjct 8762 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCC 8821
Query 199529 TCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 8822 TCCTTGTCCTGGATCTT 8838
>seq98
Length=54307
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || ||||||||||| || | ||||||||||| | ||| | || ||
Sbjct 35359 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 35418
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||| |||||||| ||||||||||| || || || || |||
Sbjct 35419 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 35478
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569
|| ||||| ||| ||| |||| |||||
Sbjct 35479 TGGATCTTGGCCTTGACGTTGTCGATCGTGTC 35510
>seq94
Length=311871
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || |||||||| |||||||| || |||| |||||| || | | |||
Sbjct 106046 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 105987
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || ||||||||||||||||||||||| ||| || ||
Sbjct 105986 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 105927
Query 199529 TCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 105926 TCCTTGTCCTGGATCTT 105910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178916086699455
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |