Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq314 140 4e-28 seq3 134 2e-26 seq94 122 1e-22 seq98 109 6e-19 seq144 104 3e-17 seq361 96.9 4e-15 seq142 87.8 2e-12 seq188 86.0 7e-12 >seq314 Length=39162 Score = 140 bits (154), Expect = 4e-28 Identities = 172/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || | |||||||||||| | |||| |||||| ||||| ||||||||| Sbjct 39010 TGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGC 38951 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| ||||||||||||||||||| | Sbjct 38950 TGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 38891 Query 46485 GCA-CGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTC 46542 | | | |||||||||| ||||| ||||| ||| | | | ||||| || || Sbjct 38890 GGATTCCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTC 38832 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 38831 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 >seq3 Length=57953 Score = 134 bits (148), Expect = 2e-26 Identities = 168/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || |||||| ||||| ||||| || | Sbjct 50789 TGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG 50730 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || ||||||||||| ||| |||| ||||||||||||||||||| | Sbjct 50729 AAAGAGTACGACCATCCTCGAGCTGCTTCCCG-CGAAGATCAAGCGCTGCTGGTCGGGAG 50671 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||||| | | | |||||| ||| || | Sbjct 50670 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 50611 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 50610 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 50562 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| ||| ||| || ||||| ||||| || || || ||||| | Sbjct 51322 ACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCC 51263 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| ||||||||||||||||||| || | | |||||| Sbjct 51262 GTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTT 51203 Query 46498 GTCCATGATCTTCTTCTTGA 46517 |||| |||||| ||||| Sbjct 51202 GTCCTGGATCTTAGCCTTGA 51183 >seq94 Length=311871 Score = 122 bits (134), Expect = 1e-22 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| || || || |||||| Sbjct 106364 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 106305 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| |||| || ||||||||||||||||| ||||||||||||||||| | || Sbjct 106304 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 106245 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||| ||||| ||| | | | ||||||| ||| || Sbjct 106244 GAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCG 106186 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 106185 ACCTCGAGGGTGAT 106172 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 106052 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 105993 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| || Sbjct 105992 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 105933 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || |||||||||| |||||| Sbjct 105932 ATGCCCTCCTTGTCCTGGATCTT 105910 >seq98 Length=54307 Score = 109 bits (120), Expect = 6e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| ||||||||||||||||| || Sbjct 35379 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 35438 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 35439 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 35497 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 35498 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 35534 >seq144 Length=22955 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||| || || ||||| |||| || |||||||| || ||||| Sbjct 177 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 118 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||||| ||| | || |||||||||| ||||| ||||| ||| Sbjct 117 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTT 59 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | ||||||| ||| || || || | ||||| Sbjct 58 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 23 >seq361 Length=17270 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || ||||| ||||| || | Sbjct 8694 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 8753 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| | Sbjct 8754 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAG 8813 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | | |||||||||| |||||| ||||| Sbjct 8814 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 8846 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 9136 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 9195 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || ||||||||||| || ||||| || | ||||||||||||| || Sbjct 9196 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 9255 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | |||||||||| |||||| ||||| Sbjct 9256 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 9286 >seq142 Length=61482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || | ||| ||||||||| | | ||| | || ||||| ||||| || ||||| Sbjct 3764 CTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAA 3823 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||||| ||| | || |||||||||| | |||| ||||| ||| Sbjct 3824 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGA-CGT 3882 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || | ||||| ||| || || || | |||||| Sbjct 3883 CGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 3919 >seq188 Length=518690 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTT-TTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || | | ||| ||| | |||||||| || || ||||| |||| || Sbjct 167738 ACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTC 167680 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| |||| |||| |||||||||||||| ||| |||| ||||||| Sbjct 167679 GAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTG 167620 Query 46504 GATC 46507 |||| Sbjct 167619 GATC 167616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235821099800