Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq314 143 3e-29
seq31 123 2e-23
seq94 102 8e-17
seq21 102 8e-17
seq3 98.7 1e-15
seq111 89.7 5e-13
seq361 86.0 6e-12
seq98 84.2 2e-11
>seq314
Length=39162
Score = 143 bits (158), Expect = 3e-29
Identities = 172/230 (75%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | |
Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | | | |||| | || | || || | ||||| ||||| | |||| || ||||
Sbjct 38841 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACC 38899
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||||||||| ||||| || |||| ||||| |||| ||||||||
Sbjct 38900 AGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACA 38959
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||| ||||| | || || ||| ||||| || | ||| | || |||
Sbjct 38960 ACATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 39009
>seq31
Length=506143
Score = 123 bits (136), Expect = 2e-23
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || || ||||| || || ||||||||| | | |||||| || | ||| | |||
Sbjct 247415 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTC 247474
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
|||| || ||||||||||||||||| |||||||| ||||| || |||||| |||
Sbjct 247475 CACCAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGAT 247534
Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395
||| || ||||||||||| ||| || |||||||| | | |||||| || | ||||
Sbjct 247535 GAAGTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAGATGTCC 247592
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004
||| |||||||||||||| | ||| || ||||| ||||| || || | |||||| |||
Sbjct 247025 GAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAGCC 247084
Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064
|| ||||||| ||||||||| || |||||||| ||||| || || | ||| |||
Sbjct 247085 GGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCGCG 247144
Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
| | |||||| ||||||||||| ||||||||
Sbjct 247145 AGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTT 247180
>seq94
Length=311871
Score = 102 bits (112), Expect = 8e-17
Identities = 114/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|||||||| | |||||| || |||||||| || |||| ||||| ||| || ||||||
Sbjct 54656 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 54715
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| |||||||||||| ||||| || || |||||||||||||| || | | | |
Sbjct 54716 ATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGAGCGCTCGTCCGAG 54775
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104
||||| |||||||| |||||||| ||||
Sbjct 54776 ATCCAAGTGAGCGCCCACTCGGCCTTCTTCT 54806
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379
|||| | || |||| ||||| ||||| || || ||||||| ||||| ||||| | ||
Sbjct 105902 TTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCG 105961
Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439
|||| || ||||| || |||| || || || || ||||||||||| || || |||
Sbjct 105962 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 106021
Query 38440 CGCTGCATTTGGTGCTGCGT 38459
| || || | |||||||||
Sbjct 106022 CCCTCCACCTCGTGCTGCGT 106041
>seq21
Length=367166
Score = 102 bits (112), Expect = 8e-17
Identities = 114/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|||||||| | |||||| || |||||||| || |||| ||||| ||| || ||||||
Sbjct 352237 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 352296
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| |||||||||||| ||||| || || || ||||||||||| || | | | |
Sbjct 352297 ATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGAGCGGTCGTCCGAG 352356
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104
|||||| |||||||| |||||||| ||||
Sbjct 352357 ATCCAGGTGAGCGCCCACTCGGCCTTCTTCT 352387
>seq3
Length=57953
Score = 98.7 bits (108), Expect = 1e-15
Identities = 152/216 (70%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | |
Sbjct 50562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 50621
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || | || || | ||||| ||||| || || |||||||
Sbjct 50622 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 50681
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | |||||| || ||||| || || | || || || || ||||||
Sbjct 50682 CAGCGCTTGATCTTCGCGGG-AAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 50740
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| |||| || || | |||||||||
Sbjct 50741 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGT 50776
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || || ||||||| ||||| | || | |||||| ||
Sbjct 51191 AAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAG 51250
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| || || ||||||||||| || || | ||||||||
Sbjct 51251 CAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACGCTGCAC 51310
Query 38448 TTGGTGCTGCGT 38459
||||||| |||
Sbjct 51311 CTGGTGCTTCGT 51322
>seq111
Length=69946
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || || ||||||| ||||||||||| | |||||| ||
Sbjct 54234 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCGGGGAAG 54293
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || ||| ||||| ||| | |||||||| | |||| ||| |||| || |||
Sbjct 54294 CAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACCCTTCAT 54353
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
| || |||| | | ||||||
Sbjct 54354 CTCGTCTTGCGCCTACGCGGCGGC 54377
>seq361
Length=17270
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| |||||||| || ||||||| ||||| || || | |||||| ||
Sbjct 8838 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 8779
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| || || || || ||||||||||| || || |||| || ||
Sbjct 8778 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 8719
Query 38448 TTGGTGCTGCGT 38459
| |||||||||
Sbjct 8718 CTCGTGCTGCGT 8707
>seq98
Length=54307
Score = 84.2 bits (92), Expect = 2e-11
Identities = 121/168 (72%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338
|||||| |||| |||||| | | |||| | | |||| | || | || |||| ||
Sbjct 35534 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 35476
Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398
||| ||||| || ||| | ||||| ||||| ||||| | || ||||| ||||| || ||
Sbjct 35475 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 35416
Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| ||||| || ||||||||||| || ||||| |||| || ||
Sbjct 35415 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCA 35368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500170517961600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |