Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq314 143 3e-29 seq31 123 2e-23 seq94 102 8e-17 seq21 102 8e-17 seq3 98.7 1e-15 seq111 89.7 5e-13 seq361 86.0 6e-12 seq98 84.2 2e-11 >seq314 Length=39162 Score = 143 bits (158), Expect = 3e-29 Identities = 172/230 (75%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | | Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | || | || || | ||||| ||||| | |||| || |||| Sbjct 38841 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACC 38899 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||||||||| ||||| || |||| ||||| |||| |||||||| Sbjct 38900 AGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACA 38959 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | || || ||| ||||| || | ||| | || ||| Sbjct 38960 ACATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 39009 >seq31 Length=506143 Score = 123 bits (136), Expect = 2e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||| || || ||||||||| | | |||||| || | ||| | ||| Sbjct 247415 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTC 247474 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 |||| || ||||||||||||||||| |||||||| ||||| || |||||| ||| Sbjct 247475 CACCAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGAT 247534 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 ||| || ||||||||||| ||| || |||||||| | | |||||| || | |||| Sbjct 247535 GAAGTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAGATGTCC 247592 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||||||||||||| | ||| || ||||| ||||| || || | |||||| ||| Sbjct 247025 GAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAGCC 247084 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || ||||||| ||||||||| || |||||||| ||||| || || | ||| ||| Sbjct 247085 GGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCGCG 247144 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | | |||||| ||||||||||| |||||||| Sbjct 247145 AGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTT 247180 >seq94 Length=311871 Score = 102 bits (112), Expect = 8e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| | |||||| || |||||||| || |||| ||||| ||| || |||||| Sbjct 54656 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 54715 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || || |||||||||||||| || | | | | Sbjct 54716 ATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGAGCGCTCGTCCGAG 54775 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104 ||||| |||||||| |||||||| |||| Sbjct 54776 ATCCAAGTGAGCGCCCACTCGGCCTTCTTCT 54806 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 |||| | || |||| ||||| ||||| || || ||||||| ||||| ||||| | || Sbjct 105902 TTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCG 105961 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 |||| || ||||| || |||| || || || || ||||||||||| || || ||| Sbjct 105962 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 106021 Query 38440 CGCTGCATTTGGTGCTGCGT 38459 | || || | ||||||||| Sbjct 106022 CCCTCCACCTCGTGCTGCGT 106041 >seq21 Length=367166 Score = 102 bits (112), Expect = 8e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| | |||||| || |||||||| || |||| ||||| ||| || |||||| Sbjct 352237 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 352296 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || || || ||||||||||| || | | | | Sbjct 352297 ATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGAGCGGTCGTCCGAG 352356 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104 |||||| |||||||| |||||||| |||| Sbjct 352357 ATCCAGGTGAGCGCCCACTCGGCCTTCTTCT 352387 >seq3 Length=57953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | | Sbjct 50562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 50621 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | ||||| ||||| || || ||||||| Sbjct 50622 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 50681 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | |||||| || ||||| || || | || || || || |||||| Sbjct 50682 CAGCGCTTGATCTTCGCGGG-AAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 50740 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| |||| || || | ||||||||| Sbjct 50741 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGT 50776 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || || ||||||| ||||| | || | |||||| || Sbjct 51191 AAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAG 51250 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || || ||||||||||| || || | |||||||| Sbjct 51251 CAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACGCTGCAC 51310 Query 38448 TTGGTGCTGCGT 38459 ||||||| ||| Sbjct 51311 CTGGTGCTTCGT 51322 >seq111 Length=69946 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || || ||||||| ||||||||||| | |||||| || Sbjct 54234 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCGGGGAAG 54293 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || ||| ||||| ||| | |||||||| | |||| ||| |||| || ||| Sbjct 54294 CAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACCCTTCAT 54353 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 | || |||| | | |||||| Sbjct 54354 CTCGTCTTGCGCCTACGCGGCGGC 54377 >seq361 Length=17270 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| |||||||| || ||||||| ||||| || || | |||||| || Sbjct 8838 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 8779 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| || || || || ||||||||||| || || |||| || || Sbjct 8778 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 8719 Query 38448 TTGGTGCTGCGT 38459 | ||||||||| Sbjct 8718 CTCGTGCTGCGT 8707 >seq98 Length=54307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| |||||| | | |||| | | |||| | || | || |||| || Sbjct 35534 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 35476 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| ||||| || ||| | ||||| ||||| ||||| | || ||||| ||||| || || Sbjct 35475 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 35416 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| || ||||||||||| || ||||| |||| || || Sbjct 35415 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCA 35368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170517961600