Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq102 134 2e-26 seq46 127 2e-24 seq84 87.8 2e-12 >seq102 Length=108910 Score = 134 bits (148), Expect = 2e-26 Identities = 275/404 (68%), Gaps = 11/404 (3%) Strand=Plus/Minus Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650 ||||||||||||| || ||| |||||||||| ||| || ||||| |||||| | Sbjct 31831 CGAAACCGTCCATCTCGACGAGGAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTGCCGC 31772 Query 11651 GCATAC------CACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 || || | | |||| |||| | |||| ||||||||||| |||||||| | Sbjct 31771 -CAAACTGTCCGCCCTTGCCACGAGCTTTT--CCGATCGCGTCAATCTCGTCGATGAAGA 31715 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| ||||| ||| ||||| |||| || || || ||||| |||| || | Sbjct 31714 TGATGCACGGCGCGTTCTTCTTGGCCTGGGCGAAGAGGTCTCGGACACGGCTCGCACCGA 31655 Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGAC 11823 | || ||||||||||| ||||| | | | | || || || | |||||| || | Sbjct 31654 CTCCGACGAACATCTCGACGAACTCGGAGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCT 31596 Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883 || || ||| | || |||||||| ||||| || ||||| || | || | ||| | | Sbjct 31595 TCGCCTGCGGTCGCCTTGGCGAGGAGCGTCTTGCCGGTACCGGGAGGGCCGGAGAGGATG 31536 Query 11884 GCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCC 11943 ||||| ||||| ||||||||||| | |||| | || || ||||||||||| | Sbjct 31535 GCGCCGCGGGGAATCTTGGCACCGAGGCGCTCGTAGTGTTCCGGGTTCTTGAGGAACTTG 31476 Query 11944 ACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAAC 11987 || | |||| | ||||||||||| ||| || || |||| Sbjct 31475 ACGAACTCCATGATCTCCTCCTTGGCCTCGTCCATTCCGGCAAC 31432 >seq46 Length=135777 Score = 127 bits (140), Expect = 2e-24 Identities = 251/367 (68%), Gaps = 7/367 (2%) Strand=Plus/Minus Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650 |||| |||||||| || ||| |||||||||| |||| || ||||| |||||| | Sbjct 567 CGAAGCCGTCCATCTCGACGAGGAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTGCCGC 508 Query 11651 GCATACCACCTGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 | || | ||| ||| ||| |||| ||||||||||| |||||||| | | Sbjct 507 CGA-ACTGGCCGCCCTTTCCACGGGCCTTTCCGATCGCGTCAATCTCGTCGATGAAGATG 449 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || ||||| ||| ||||| |||||| || || ||||| | || || ||| Sbjct 448 ATGCACGGCGCGTTCTTCTTGGCCTGGGTGAAAAGGTCGCGGACACGACTGGCACCGACA 389 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTC 11825 || ||||||||||| ||||| | | | | || || || | |||||| || | || Sbjct 388 CCGACGAACATCTCGACGAACTCGGAGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCTTC 330 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 || ||| | ||| |||||||| ||||| || ||||| || | || | ||| | ||| Sbjct 329 GCCTGCGGTCGCTTTGGCGAGGAGCGTCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGC 270 Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 ||| || |||||||||||||| | |||| | || || ||||||||||| | || Sbjct 269 GCCGCGAGGGATCTTGGCACCGAGGCGCTCGTAGTGTTCGGGGTTCTTGAGGAACTTGAC 210 Query 11946 AATCTCC 11952 | |||| Sbjct 209 GAACTCC 203 >seq84 Length=230923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 205/306 (67%), Gaps = 15/306 (5%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| || ||||| |||||||||| ||||| | || | || Sbjct 171039 GAAGCCGTCCATCTCGGTGAGGAGCTGGTTGAGGGTCTGCTT---------GTGGAAGCT 170989 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711 | | || ||| ||||| |||||| ||||| | ||| |||||||| ||||| Sbjct 170988 CTGGTCTTTTGGCGAGCGCTTGCCACCGACGGCGTCGAGCTCGTCGATGAAGACGATGGC 170929 Query 11712 CGGTTGGTTGGCACGTGC--CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 || ||| || || | || ||| || || || ||||| ||| || ||||| Sbjct 170928 GGGAGCGTTCTTGCGGGCAGCAGT--GAAGAGCTCGCGCACACGGCGCGCGCCGACACCG 170871 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 ||| ||||||| |||| | | |||| | | || | |||||| ||| | ||| || Sbjct 170870 ACGTACATCTCGTCGAACTCGGACCCAGA-CGCCGAGAAGAAGGGCACACCGGCCTCGCC 170812 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||| ||| || |||||||||||||| || ||||| || | |||| || ||| |||| Sbjct 170811 TGCGACGGCACGCGCGAGGAGAGTCTTGCCGGTACCGGGAGGGCCAGTCAGGAGGACGCC 170752 Query 11889 ACGGGG 11894 || || Sbjct 170751 GCGAGG 170746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973312797000