Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq102 134 2e-26
seq46 127 2e-24
seq84 87.8 2e-12
>seq102
Length=108910
Score = 134 bits (148), Expect = 2e-26
Identities = 275/404 (68%), Gaps = 11/404 (3%)
Strand=Plus/Minus
Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650
||||||||||||| || ||| |||||||||| ||| || ||||| |||||| |
Sbjct 31831 CGAAACCGTCCATCTCGACGAGGAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTGCCGC 31772
Query 11651 GCATAC------CACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704
|| || | | |||| |||| | |||| ||||||||||| |||||||| |
Sbjct 31771 -CAAACTGTCCGCCCTTGCCACGAGCTTTT--CCGATCGCGTCAATCTCGTCGATGAAGA 31715
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
||| ||||| ||| ||||| |||| || || || ||||| |||| || |
Sbjct 31714 TGATGCACGGCGCGTTCTTCTTGGCCTGGGCGAAGAGGTCTCGGACACGGCTCGCACCGA 31655
Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGAC 11823
| || ||||||||||| ||||| | | | | || || || | |||||| || |
Sbjct 31654 CTCCGACGAACATCTCGACGAACTCGGAGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCT 31596
Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883
|| || ||| | || |||||||| ||||| || ||||| || | || | ||| | |
Sbjct 31595 TCGCCTGCGGTCGCCTTGGCGAGGAGCGTCTTGCCGGTACCGGGAGGGCCGGAGAGGATG 31536
Query 11884 GCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCC 11943
||||| ||||| ||||||||||| | |||| | || || ||||||||||| |
Sbjct 31535 GCGCCGCGGGGAATCTTGGCACCGAGGCGCTCGTAGTGTTCCGGGTTCTTGAGGAACTTG 31476
Query 11944 ACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAAC 11987
|| | |||| | ||||||||||| ||| || || ||||
Sbjct 31475 ACGAACTCCATGATCTCCTCCTTGGCCTCGTCCATTCCGGCAAC 31432
>seq46
Length=135777
Score = 127 bits (140), Expect = 2e-24
Identities = 251/367 (68%), Gaps = 7/367 (2%)
Strand=Plus/Minus
Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650
|||| |||||||| || ||| |||||||||| |||| || ||||| |||||| |
Sbjct 567 CGAAGCCGTCCATCTCGACGAGGAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTGCCGC 508
Query 11651 GCATACCACCTGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706
| || | ||| ||| ||| |||| ||||||||||| |||||||| | |
Sbjct 507 CGA-ACTGGCCGCCCTTTCCACGGGCCTTTCCGATCGCGTCAATCTCGTCGATGAAGATG 449
Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766
|| ||||| ||| ||||| |||||| || || ||||| | || || |||
Sbjct 448 ATGCACGGCGCGTTCTTCTTGGCCTGGGTGAAAAGGTCGCGGACACGACTGGCACCGACA 389
Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTC 11825
|| ||||||||||| ||||| | | | | || || || | |||||| || | ||
Sbjct 388 CCGACGAACATCTCGACGAACTCGGAGCCGGAG-ACGGAGAGGAAGGGGACGCCGGCTTC 330
Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885
|| ||| | ||| |||||||| ||||| || ||||| || | || | ||| | |||
Sbjct 329 GCCTGCGGTCGCTTTGGCGAGGAGCGTCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGC 270
Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945
||| || |||||||||||||| | |||| | || || ||||||||||| | ||
Sbjct 269 GCCGCGAGGGATCTTGGCACCGAGGCGCTCGTAGTGTTCGGGGTTCTTGAGGAACTTGAC 210
Query 11946 AATCTCC 11952
| ||||
Sbjct 209 GAACTCC 203
>seq84
Length=230923
Score = 87.8 bits (96), Expect = 2e-12
Identities = 205/306 (67%), Gaps = 15/306 (5%)
Strand=Plus/Minus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651
||| |||||||| || ||||| |||||||||| ||||| | || | ||
Sbjct 171039 GAAGCCGTCCATCTCGGTGAGGAGCTGGTTGAGGGTCTGCTT---------GTGGAAGCT 170989
Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711
| | || ||| ||||| |||||| ||||| | ||| |||||||| |||||
Sbjct 170988 CTGGTCTTTTGGCGAGCGCTTGCCACCGACGGCGTCGAGCTCGTCGATGAAGACGATGGC 170929
Query 11712 CGGTTGGTTGGCACGTGC--CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769
|| ||| || || | || ||| || || || ||||| ||| || |||||
Sbjct 170928 GGGAGCGTTCTTGCGGGCAGCAGT--GAAGAGCTCGCGCACACGGCGCGCGCCGACACCG 170871
Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828
||| ||||||| |||| | | |||| | | || | |||||| ||| | ||| ||
Sbjct 170870 ACGTACATCTCGTCGAACTCGGACCCAGA-CGCCGAGAAGAAGGGCACACCGGCCTCGCC 170812
Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888
|||| ||| || |||||||||||||| || ||||| || | |||| || ||| ||||
Sbjct 170811 TGCGACGGCACGCGCGAGGAGAGTCTTGCCGGTACCGGGAGGGCCAGTCAGGAGGACGCC 170752
Query 11889 ACGGGG 11894
|| ||
Sbjct 170751 GCGAGG 170746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588973312797000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |