Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 134 3e-26 seq98 118 2e-21 seq314 116 8e-21 seq361 111 3e-19 seq94 104 5e-17 seq111 84.2 5e-11 >seq3 Length=57953 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || || || |||||||| | |||||| | ||||| ||| Sbjct 50769 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCG 50710 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| ||||| ||||| || ||||| ||| Sbjct 50709 AGCTGCTT-CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 50651 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || |||||||| || || || ||||| | ||||| Sbjct 50650 ATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTG 50591 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 50590 CCGGTGAGGGTCTTGACGAAGATCTGCAT 50562 >seq98 Length=54307 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || ||||| ||||| || | |||||| | || || ||| Sbjct 35362 ACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCG 35421 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 35422 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 35481 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||||||| || || |||||||| || || || ||||| Sbjct 35482 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 35531 >seq314 Length=39162 Score = 116 bits (128), Expect = 8e-21 Identities = 156/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| || || || || || ||||| || || || ||||| ||| || || | || Sbjct 38996 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 38937 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT-TCTTT 195044 || || |||||||| || |||||||| | || || ||||| ||||| || || || || Sbjct 38936 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTT 38877 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||| ||||| || ||||||||| || |||||||||||| || || || ||||| | Sbjct 38876 GTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 38817 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || | || || ||||| | ||||| Sbjct 38816 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 >seq361 Length=17270 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | ||||| ||| Sbjct 9154 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCG 9213 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 9214 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 9273 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 9274 ATCTTGGCCTTGAC 9287 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | || || ||| Sbjct 8714 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 8773 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 8774 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 8833 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 8834 ATCTTGGCCTTGAC 8847 >seq94 Length=311871 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | || || ||| Sbjct 106034 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 105975 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 105974 AGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 105915 Query 195052 ATTTT 195056 || || Sbjct 105914 ATCTT 105910 >seq111 Length=69946 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || ||||| || || || |||||| ||||| || | || || | | || Sbjct 54362 CAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTCGAGCGTGCGGCTGTC 54303 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||||||||| || ||||| || || || || ||||| ||||| ||||| || ||||| Sbjct 54302 CTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 54243 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || || || ||||||| | || || ||| Sbjct 54242 CTGGATCTTGGCCTTGACGATGTCGATCGTG 54212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476411439955