Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 8e-15 seq314 84.2 1e-11 >seq3 Length=57953 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/195 (72%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || |||||||| | || |||| || ||||| || ||| | || Sbjct 50751 TCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCG-CGAAG 50693 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | ||||||||||| |||||| ||||| || Sbjct 50692 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC--AT 50635 Query 34911 GCTATCGAT--TCACCGGC--CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | |||||| |||| ||| ||||| || || ||||| ||||| Sbjct 50634 --TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 50577 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 50576 GACGAAGATCTGCAT 50562 >seq314 Length=39162 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||||||||| |||| || | ||| || ||||| ||||| ||||| Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 38949 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || ||||| || || || || || | || |||||||| | || Sbjct 38948 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 38889 Query 34875 AC-CCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | |||||||||||| |||||| |||||| | ||||| | ||| | || Sbjct 38888 ATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGT----TGTCGATGGTGTCCGAAGACT 38833 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||| ||| ||||| || || ||||| ||||| || ||||||||||| Sbjct 38832 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632155887720