Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq74 196 9e-45 seq94 96.9 6e-15 seq21 89.7 1e-12 >seq74 Length=129003 Score = 196 bits (216), Expect = 9e-45 Identities = 542/819 (66%), Gaps = 23/819 (3%) Strand=Plus/Minus Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||||| || |||||||||||||| ||||| ||| ||||| | ||| ||| | || | Sbjct 35824 TTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACG 35765 Query 221879 TTGTCCCAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 || |||||| | ||||| || | || | |||| | |||||| ||| || || Sbjct 35764 GCGTACCAGAGCT-TCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTC---CTTCTCGTA 35709 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT-GG 221996 | | ||||| | |||| || ||||| |||||| || || || | ||| || Sbjct 35708 CTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGG-CGCCTCGG 35650 Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 | || || | || ||||| ||| | | ||| | || |||||||||||| |||| Sbjct 35649 CCGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGA 35590 Query 222057 TCCACAGCGCCTGAAAGAG-ATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCC 222113 |||| || || ||||| | || | ||| | ||||||| ||||| ||| || | Sbjct 35589 TCCAAAGGGC---AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGC 35533 Query 222114 TCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGC 222173 || || | ||||| || ||||| |||||||||||||| || |||| ||| | |||| Sbjct 35532 GGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGC 35473 Query 222174 CGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGG 222233 | || ||||||||||| ||||| || || | | || |||| | | ||| || Sbjct 35472 CCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCA 35413 Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293 | || | | ||||| || ||||| ||||| ||||||| |||| || | | Sbjct 35412 TGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGA 35353 Query 222294 GGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| | || | |||||| || || || || ||||| | ||||| |||||| Sbjct 35352 TGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGA 35293 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| ||||||||| || ||||| ||||| | | | || || || ||||| | Sbjct 35292 GCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGA 35233 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 ||| | | | | | |||||| || ||||| || ||||| |||||||| | | Sbjct 35232 GCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCT 35173 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGG 222533 ||||| || | ||||||||| | | | | | |||| ||| ||||| || | | Sbjct 35172 CCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCG 35113 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC-CCTTGGAGCTGGA----GAG 222588 || | |||| ||||| ||| || | ||| || | ||||| | | || ||| Sbjct 35112 CGACGCGCATGAGCATGTGCTGCGGTCGCTC----GGCCACCTTGCCG-TCGAGGCGGAG 35058 Query 222589 CAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 ||||||||| || || |||||||| || |||||||| Sbjct 35057 CAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAGTT 35019 >seq94 Length=311871 Score = 96.9 bits (106), Expect = 6e-15 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| ||| |||||| |||||| | | |||||| | | | ||||||| || Sbjct 54816 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCT-CGGAC-GAGCGCTCCG 54759 Query 25870 TTT--GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 | | |||||||| || || || || || || || ||||||||||| ||| ||| |||| Sbjct 54758 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 54699 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAG 25953 | ||| ||||||||||||||||| || Sbjct 54698 TCGCGTCCATCTTCTGGCTCAAGAAG 54673 >seq21 Length=367166 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTT- 25872 ||||| ||| |||||| |||||| | | |||||| | | | || |||| ||| | Sbjct 352393 GCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCT-CGGAC-GACCGCTCCGTCTT 352336 Query 25873 -GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 |||||||| || || || || || || || ||||||||||| ||| ||| ||||| || Sbjct 352335 CGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGC 352276 Query 25932 GGCCATCTTCTGGCTCAAGCAG 25953 | ||||||||||||||||| || Sbjct 352275 GTCCATCTTCTGGCTCAAGAAG 352254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840562145600