Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq99 264 1e-65 seq3 176 6e-39 seq144 165 1e-35 seq314 159 5e-34 seq98 150 2e-31 seq94 150 2e-31 seq46 107 3e-18 seq102 102 1e-16 >seq99 Length=498000 Score = 264 bits (292), Expect = 1e-65 Identities = 871/1343 (65%), Gaps = 21/1343 (2%) Strand=Plus/Minus Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||||||| ||||| || || || ||||||||| | || | ||||| | Sbjct 436288 ACCGTCTTTGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 436229 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| | || | || ||| ||||| || || Sbjct 436228 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 436174 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || || | | || ||| |||| | || | ||||| || || ||||| ||||| Sbjct 436173 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 436114 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | |||||||||||||| || || | | | | || || || | || || | Sbjct 436113 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACCGTCGCCAACGCCGTCG 436054 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775 | || || || || ||||||| || || || || ||||| || |||||||| | ||| Sbjct 436053 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 435996 Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || |||| || ||| || | || ||||| || || || || || || || || || Sbjct 435995 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 435936 Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || || |||||||| || | || || || || | ||||| || | || || || Sbjct 435935 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGCGG 435876 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || ||||| || |||| || || | || || ||||| || ||||| || || Sbjct 435875 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 435816 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013 || || || || || || || || || || || || || || || |||||| | Sbjct 435815 CGGCGACACCCACCTCGGCGGCGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 435757 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072 |||||| || ||||| ||||| || | || | ||| || | || || || || Sbjct 435756 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGC 435698 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132 || | || || || || || ||||| || || ||||| || | || || || | | | Sbjct 435697 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACGATC 435638 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || ||| | || || || || |||||||| || | || ||||| || || || Sbjct 435637 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 435578 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || ||| | | || | || | | ||||| || || || | || || || Sbjct 435577 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGC 435518 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||| | ||||| || ||| ||| | || |||||||| || || || || |||||| Sbjct 435517 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 435458 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || ||| | || || | | || ||||||| || || ||||| || Sbjct 435457 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 435398 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||||||||| || || || || || || || ||||| |||||||| || ||| | || Sbjct 435397 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 435339 Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 |||| | || ||| || || || || || || || || || | || Sbjct 435338 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCCCCTCTCTCGACC 435281 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||| | || || || || ||||| ||||| || | || | ||||| || | ||| Sbjct 435280 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 435221 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || |||||| | |||| || || || |||| || || || || || || || Sbjct 435220 ACCAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 435161 Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 || || ||||| || ||| |||| | ||||| ||| | || || || | || || | Sbjct 435160 GTCTACGAAGGGGAGCGCGCCCGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 435101 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 |||| || || | || ||| | || || || ||||| | || |||||| || ||| Sbjct 435100 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 435041 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 || || || || || |||||| | ||| ||||||| | | ||||| || | ||||| Sbjct 435040 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTCGAACAAGATC 434981 Query 196790 GTGATTACCAATGACAAGGGGCG 196812 || ||||| ||||||| ||| Sbjct 434980 ACCATCACCAACGACAAGGTGCG 434958 >seq3 Length=57953 Score = 176 bits (194), Expect = 6e-39 Identities = 167/212 (79%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| Sbjct 50562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 50621 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||||||| || ||||| ||||| || ||||| ||| Sbjct 50622 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 50681 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || ||||| ||||| || | ||||||||| Sbjct 50682 CAGCGCTTGATCTTCGC-GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 50740 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 50741 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 50772 >seq144 Length=22955 Score = 165 bits (182), Expect = 1e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 23 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 82 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || ||||| ||||| || | || || || || || |||||||| || Sbjct 83 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 142 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 ||||| || || ||||||||| |||||||||| || || || ||||| ||| | ||| Sbjct 143 GGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 202 Query 172078 CTTCGGGGTGG 172088 | || ||||| Sbjct 203 TTGCGCGGTGG 213 >seq314 Length=39162 Score = 159 bits (176), Expect = 5e-34 Identities = 173/228 (76%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGA-AGGCATTCCACCCGATCA 171980 ||||| ||||| ||| |||| ||||||||||| || ||||| || || || ||||| || Sbjct 38841 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCA 38900 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 ||| || | || || || || || |||||||| || || || || ||| || ||||| Sbjct 38901 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 38960 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | | || ||||||||||| || || || || | ||| | || ||||| Sbjct 38961 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 39008 >seq98 Length=54307 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || || Sbjct 35534 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 35475 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || || || ||||| || || || ||||| || || ||||| || || Sbjct 35474 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 35415 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || || |||| |||||| |||| |||||||| || || ||||| || || Sbjct 35414 GGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGTCCT 35359 >seq94 Length=311871 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 106172 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 106231 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| |||||||| || || ||||| || | || || || || || |||||||| || Sbjct 106232 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 106291 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 || || || ||| || || ||| |||| |||||||| || || ||||| || || | Sbjct 106292 GGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGT 106351 Query 172078 CTTCGGGGTGG 172088 || || ||||| Sbjct 106352 CTCCGCGGTGG 106362 >seq46 Length=135777 Score = 107 bits (118), Expect = 3e-18 Identities = 260/384 (68%), Gaps = 11/384 (3%) Strand=Plus/Plus Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536 || || || ||| || |||| | || | || || || ||||||||| | ||| | | Sbjct 186 GCGAAAGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAACCCCGAACACTACGAGCGC 245 Query 198537 AGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACC 198596 |||||| ||||| || || || | ||| |||| | || ||||| || || || Sbjct 246 CTCGGTGCCAAGATCCCTCGCGGCGCCATCCTCTCCGGCCCTCCCGGTACCGGCAAGACG 305 Query 198597 CTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCT-TCAGTGCTCCG-CGG 198654 || || || || | ||| || ||| | | |||||||| || || || ||||| | Sbjct 306 CTCCTCGCCAAAGCGACCGCAGGCGAAGCCGGCGTCCCCTTCCTCTCCGT-CTCCGGCTC 364 Query 198655 CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGC 198714 |||||| | ||||||||||||| ||||| ||||| | || ||||| || || ||| | | Sbjct 365 CGAGTT-CGTCGAGATGTTCGTCGGTGTCGGTGCCAGTCGTGTCCGCGACCT-TTTCACC 422 Query 198715 AAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAG 198773 || | ||| || || || ||||||||||| || ||||||||||| | || ||| Sbjct 423 CAGGCCAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAGATTGACGCGATCGGAAAG 482 Query 198774 AAGCGTG----GTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCA 198829 |||| | | | | | | | || || || ||||| ||| |||| | ||||| Sbjct 483 GCCCGTGGAAAGGGCGGCCAGTTCGGC-GGCAACGACGAGCGCGAGTCGACGCTCAACCA 541 Query 198830 GCTTCTCACTGAGATGGATGGTTT 198853 ||| ||| |||||||| || || Sbjct 542 GCTCCTCGTCGAGATGGACGGCTT 565 >seq102 Length=108910 Score = 102 bits (112), Expect = 1e-16 Identities = 273/404 (68%), Gaps = 15/404 (4%) Strand=Plus/Plus Query 198459 GTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAAC 198518 |||| || || ||| || ||||| ||| || |||| | || | || || || ||| Sbjct 31432 GTTGCCGGAATGGACGAGGCCAAGGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAAC 31491 Query 198519 CCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCC 198578 || ||| | ||| | | |||||| || || || || || | ||| |||| | Sbjct 31492 CCGGAACACTACGAGCGCCTCGGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGCCCT 31551 Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638 || ||||| || || || || || || || | ||| || ||| | | |||||||| Sbjct 31552 CCCGGTACCGGCAAGACGCTCCTCGCCAAGGCGACCGCAGGCGAAGCCGGCGTCCCCTTC 31611 Query 198639 CT-TCAGTGCTCCG-CGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCG 198696 || || || ||||| | |||||| | ||||||||||||| || || ||||| | || | Sbjct 31612 CTCTCCGT-CTCCGGCTCCGAGTT-CGTCGAGATGTTCGTCGGAGTCGGTGCGAGCCGTG 31669 Query 198697 TCCGGGAACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAG 198755 |||| || ||||| | || || | ||| || || || ||||||||||| || ||| Sbjct 31670 TCCGAGACCTCTTCGCCCAGGC-CAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAG 31728 Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGG-AACTAC-TACACCT----GGTAATGATGAG 198809 |||||||| | || | |||| | |||| || | ||| | || || || ||| Sbjct 31729 ATTGACGCGATCGG--AAAAGC-TCGTGGCAAGGGCGGACAGTTTGGCGGCAACGACGAG 31785 Query 198810 CGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853 || ||| ||| | |||||||| ||| |||||||| ||||| Sbjct 31786 CGCGAGTCGACCCTCAACCAGCTCCTCGTCGAGATGGACGGTTT 31829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859398502800