Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq99 264 1e-65
seq3 176 6e-39
seq144 165 1e-35
seq314 159 5e-34
seq98 150 2e-31
seq94 150 2e-31
seq46 107 3e-18
seq102 102 1e-16
>seq99
Length=498000
Score = 264 bits (292), Expect = 1e-65
Identities = 871/1343 (65%), Gaps = 21/1343 (2%)
Strand=Plus/Minus
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| ||||||||||| ||||| || || || ||||||||| | || | ||||| |
Sbjct 436288 ACCGTCTTTGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 436229
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596
|| || ||| ||||| | | | ||| | || | || ||| ||||| || ||
Sbjct 436228 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 436174
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
|| || | | || ||| |||| | || | ||||| || || ||||| |||||
Sbjct 436173 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 436114
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | |||||||||||||| || || | | | | || || || | || || |
Sbjct 436113 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACCGTCGCCAACGCCGTCG 436054
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775
| || || || || ||||||| || || || || ||||| || |||||||| | |||
Sbjct 436053 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 435996
Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834
|| |||| || ||| || | || ||||| || || || || || || || || ||
Sbjct 435995 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 435936
Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894
|| || |||||||| || | || || || || | ||||| || | || || ||
Sbjct 435935 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGCGG 435876
Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954
||||| || ||||| || |||| || || | || || ||||| || ||||| || ||
Sbjct 435875 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 435816
Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013
|| || || || || || || || || || || || || || || |||||| |
Sbjct 435815 CGGCGACACCCACCTCGGCGGCGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 435757
Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072
|||||| || ||||| ||||| || | || | ||| || | || || || ||
Sbjct 435756 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGC 435698
Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132
|| | || || || || || ||||| || || ||||| || | || || || | | |
Sbjct 435697 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACGATC 435638
Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192
||||| || ||| | || || || || |||||||| || | || ||||| || || ||
Sbjct 435637 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 435578
Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252
|| ||| | | || | || | | ||||| || || || | || || ||
Sbjct 435577 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGC 435518
Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312
||| | ||||| || ||| ||| | || |||||||| || || || || ||||||
Sbjct 435517 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 435458
Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372
|| ||| | || || | | || ||||||| || || ||||| ||
Sbjct 435457 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 435398
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||||||||| || || || || || || || ||||| |||||||| || ||| | ||
Sbjct 435397 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 435339
Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489
|||| | || ||| || || || || || || || || || | ||
Sbjct 435338 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCCCCTCTCTCGACC 435281
Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549
||| | || || || || ||||| ||||| || | || | ||||| || | |||
Sbjct 435280 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 435221
Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609
|| |||||| | |||| || || || |||| || || || || || || ||
Sbjct 435220 ACCAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 435161
Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669
|| || ||||| || ||| |||| | ||||| ||| | || || || | || || |
Sbjct 435160 GTCTACGAAGGGGAGCGCGCCCGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 435101
Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729
|||| || || | || ||| | || || || ||||| | || |||||| || |||
Sbjct 435100 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 435041
Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789
|| || || || || |||||| | ||| ||||||| | | ||||| || | |||||
Sbjct 435040 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTCGAACAAGATC 434981
Query 196790 GTGATTACCAATGACAAGGGGCG 196812
|| ||||| ||||||| |||
Sbjct 434980 ACCATCACCAACGACAAGGTGCG 434958
>seq3
Length=57953
Score = 176 bits (194), Expect = 6e-39
Identities = 167/212 (79%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || |||||||||||||||||||||||
Sbjct 50562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 50621
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||||||| || ||||| ||||| || ||||| |||
Sbjct 50622 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 50681
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || | || || || || || ||||| || ||||| ||||| || | |||||||||
Sbjct 50682 CAGCGCTTGATCTTCGC-GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 50740
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
| || |||||||| || || ||||| || ||
Sbjct 50741 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 50772
>seq144
Length=22955
Score = 165 bits (182), Expect = 1e-35
Identities = 151/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| ||
Sbjct 23 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 82
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| ||||| || ||||| ||||| || | || || || || || |||||||| ||
Sbjct 83 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 142
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077
||||| || || ||||||||| |||||||||| || || || ||||| ||| | |||
Sbjct 143 GGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 202
Query 172078 CTTCGGGGTGG 172088
| || |||||
Sbjct 203 TTGCGCGGTGG 213
>seq314
Length=39162
Score = 159 bits (176), Expect = 5e-34
Identities = 173/228 (76%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || |||||||||||||| ||||| ||
Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGA-AGGCATTCCACCCGATCA 171980
||||| ||||| ||| |||| ||||||||||| || ||||| || || || ||||| ||
Sbjct 38841 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCA 38900
Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040
||| || | || || || || || |||||||| || || || || ||| || |||||
Sbjct 38901 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 38960
Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
| | || ||||||||||| || || || || | ||| | || |||||
Sbjct 38961 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 39008
>seq98
Length=54307
Score = 150 bits (166), Expect = 2e-31
Identities = 139/176 (79%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || ||
Sbjct 35534 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 35475
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| ||||| || || || ||||| || || || ||||| || || ||||| || ||
Sbjct 35474 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 35415
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
|| || || || |||| |||||| |||| |||||||| || || ||||| || ||
Sbjct 35414 GGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGTCCT 35359
>seq94
Length=311871
Score = 150 bits (166), Expect = 2e-31
Identities = 148/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| ||
Sbjct 106172 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 106231
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| |||||||| || || ||||| || | || || || || || |||||||| ||
Sbjct 106232 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 106291
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077
|| || || ||| || || ||| |||| |||||||| || || ||||| || || |
Sbjct 106292 GGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGT 106351
Query 172078 CTTCGGGGTGG 172088
|| || |||||
Sbjct 106352 CTCCGCGGTGG 106362
>seq46
Length=135777
Score = 107 bits (118), Expect = 3e-18
Identities = 260/384 (68%), Gaps = 11/384 (3%)
Strand=Plus/Plus
Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536
|| || || ||| || |||| | || | || || || ||||||||| | ||| | |
Sbjct 186 GCGAAAGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAACCCCGAACACTACGAGCGC 245
Query 198537 AGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACC 198596
|||||| ||||| || || || | ||| |||| | || ||||| || || ||
Sbjct 246 CTCGGTGCCAAGATCCCTCGCGGCGCCATCCTCTCCGGCCCTCCCGGTACCGGCAAGACG 305
Query 198597 CTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCT-TCAGTGCTCCG-CGG 198654
|| || || || | ||| || ||| | | |||||||| || || || ||||| |
Sbjct 306 CTCCTCGCCAAAGCGACCGCAGGCGAAGCCGGCGTCCCCTTCCTCTCCGT-CTCCGGCTC 364
Query 198655 CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGC 198714
|||||| | ||||||||||||| ||||| ||||| | || ||||| || || ||| | |
Sbjct 365 CGAGTT-CGTCGAGATGTTCGTCGGTGTCGGTGCCAGTCGTGTCCGCGACCT-TTTCACC 422
Query 198715 AAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAG 198773
|| | ||| || || || ||||||||||| || ||||||||||| | || |||
Sbjct 423 CAGGCCAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAGATTGACGCGATCGGAAAG 482
Query 198774 AAGCGTG----GTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCA 198829
|||| | | | | | | | || || || ||||| ||| |||| | |||||
Sbjct 483 GCCCGTGGAAAGGGCGGCCAGTTCGGC-GGCAACGACGAGCGCGAGTCGACGCTCAACCA 541
Query 198830 GCTTCTCACTGAGATGGATGGTTT 198853
||| ||| |||||||| || ||
Sbjct 542 GCTCCTCGTCGAGATGGACGGCTT 565
>seq102
Length=108910
Score = 102 bits (112), Expect = 1e-16
Identities = 273/404 (68%), Gaps = 15/404 (4%)
Strand=Plus/Plus
Query 198459 GTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAAC 198518
|||| || || ||| || ||||| ||| || |||| | || | || || || |||
Sbjct 31432 GTTGCCGGAATGGACGAGGCCAAGGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAAC 31491
Query 198519 CCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCC 198578
|| ||| | ||| | | |||||| || || || || || | ||| |||| |
Sbjct 31492 CCGGAACACTACGAGCGCCTCGGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGCCCT 31551
Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638
|| ||||| || || || || || || || | ||| || ||| | | ||||||||
Sbjct 31552 CCCGGTACCGGCAAGACGCTCCTCGCCAAGGCGACCGCAGGCGAAGCCGGCGTCCCCTTC 31611
Query 198639 CT-TCAGTGCTCCG-CGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCG 198696
|| || || ||||| | |||||| | ||||||||||||| || || ||||| | || |
Sbjct 31612 CTCTCCGT-CTCCGGCTCCGAGTT-CGTCGAGATGTTCGTCGGAGTCGGTGCGAGCCGTG 31669
Query 198697 TCCGGGAACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAG 198755
|||| || ||||| | || || | ||| || || || ||||||||||| || |||
Sbjct 31670 TCCGAGACCTCTTCGCCCAGGC-CAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAG 31728
Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGG-AACTAC-TACACCT----GGTAATGATGAG 198809
|||||||| | || | |||| | |||| || | ||| | || || || |||
Sbjct 31729 ATTGACGCGATCGG--AAAAGC-TCGTGGCAAGGGCGGACAGTTTGGCGGCAACGACGAG 31785
Query 198810 CGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853
|| ||| ||| | |||||||| ||| |||||||| |||||
Sbjct 31786 CGCGAGTCGACCCTCAACCAGCTCCTCGTCGAGATGGACGGTTT 31829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657859398502800
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