Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3 116 3e-21
seq314 105 6e-18
seq144 104 2e-17
seq94 82.4 7e-11
>seq3
Length=57953
Score = 116 bits (128), Expect = 3e-21
Identities = 165/231 (71%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || ||||| || || || || ||||| || || |
Sbjct 50559 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCG 50618
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || ||||| || ||||| || || || ||||||||
Sbjct 50619 TCGGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGAC 50678
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || || |||||||| | |||||| ||||| |||||| | | | || |||||
Sbjct 50679 CAGCAGCGCTTGATCTTCG-CGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTAC 50737
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| ||||| || ||| | ||| |||| | |||||||||
Sbjct 50738 AACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGGC 50788
>seq314
Length=39162
Score = 105 bits (116), Expect = 6e-18
Identities = 168/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || ||||| || || || || ||||| || || |
Sbjct 38778 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCT 38837
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGA-AGGAATACCTCCCGA 24819
| ||||| | || | || || ||||| || ||||| || ||||| ||||||||
Sbjct 38838 TCGGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGA 38897
Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GA 24876
|| || || |||||||| || || || ||||| ||||| || | || | ||| ||
Sbjct 38898 CCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGA--CG-GTCGCACGCTCAGCGA 38954
Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| ||||| || ||||| || ||||| || |||||||| | |||||||| |||
Sbjct 38955 CTACAACATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 39009
>seq144
Length=22955
Score = 104 bits (114), Expect = 2e-17
Identities = 142/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799
|| || ||||| || || | ||||||| | || | || || ||||| || |||
Sbjct 23 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 82
Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| || || || || ||||| || || || |||||||| || ||||| ||||| |||||
Sbjct 83 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA- 141
Query 24860 TCGAGAAACATG--TCA-GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916
|| || || | ||| ||||| |||||||||||||||||||| || ||| | || |||
Sbjct 142 -CG-GACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTG 199
Query 24917 CGATTGCGCGGAGG 24930
| |||||||| ||
Sbjct 200 AGGTTGCGCGGTGG 213
>seq94
Length=311871
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799
|| || ||||| || || | ||||||| | || | || || ||||| || |||
Sbjct 106172 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 106231
Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| || || || || || || || || || |||||||| ||||| || ||||| |||||
Sbjct 106232 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 106291
Query 24860 TCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916
| | || | |||| | ||||||||||| ||||| ||||| || ||| ||||| |
Sbjct 106292 GGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 106348
Query 24917 CGATTGCGCGGAGGC 24931
|| | ||||| |||
Sbjct 106349 CGTCTCCGCGGTGGC 106363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449895547342200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |