Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq314 105 6e-18 seq144 104 2e-17 seq94 82.4 7e-11 >seq3 Length=57953 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || | Sbjct 50559 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCG 50618 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| || ||||| || || || |||||||| Sbjct 50619 TCGGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGAC 50678 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || |||||||| | |||||| ||||| |||||| | | | || ||||| Sbjct 50679 CAGCAGCGCTTGATCTTCG-CGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTAC 50737 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| | ||| |||| | ||||||||| Sbjct 50738 AACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGGC 50788 >seq314 Length=39162 Score = 105 bits (116), Expect = 6e-18 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || | Sbjct 38778 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCT 38837 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGA-AGGAATACCTCCCGA 24819 | ||||| | || | || || ||||| || ||||| || ||||| |||||||| Sbjct 38838 TCGGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGA 38897 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GA 24876 || || || |||||||| || || || ||||| ||||| || | || | ||| || Sbjct 38898 CCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGA--CG-GTCGCACGCTCAGCGA 38954 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || ||||| || ||||| || |||||||| | |||||||| ||| Sbjct 38955 CTACAACATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 39009 >seq144 Length=22955 Score = 104 bits (114), Expect = 2e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||||| || || | ||||||| | || | || || ||||| || ||| Sbjct 23 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 82 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || || || ||||| || || || |||||||| || ||||| ||||| ||||| Sbjct 83 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA- 141 Query 24860 TCGAGAAACATG--TCA-GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 || || || | ||| ||||| |||||||||||||||||||| || ||| | || ||| Sbjct 142 -CG-GACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTG 199 Query 24917 CGATTGCGCGGAGG 24930 | |||||||| || Sbjct 200 AGGTTGCGCGGTGG 213 >seq94 Length=311871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||||| || || | ||||||| | || | || || ||||| || ||| Sbjct 106172 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 106231 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || || || || || || || || |||||||| ||||| || ||||| ||||| Sbjct 106232 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 106291 Query 24860 TCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 | | || | |||| | ||||||||||| ||||| ||||| || ||| ||||| | Sbjct 106292 GGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 106348 Query 24917 CGATTGCGCGGAGGC 24931 || | ||||| ||| Sbjct 106349 CGTCTCCGCGGTGGC 106363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895547342200