Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 116 2e-21 seq314 113 3e-20 seq98 93.3 3e-14 seq94 93.3 3e-14 seq144 84.2 1e-11 >seq3 Length=57953 Score = 116 bits (128), Expect = 2e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||||| ||| ||||||||| ||||| || ||||| || | || |||| Sbjct 50773 CAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATC 50714 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||| ||||||||| || |||||||| | || | ||||||||||| Sbjct 50713 CTCGAGCTGCTTCCCG-CGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 50655 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| | |||| || | ||| || || | ||| ||||| Sbjct 50654 CTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGT 50595 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || ||||||||||| || |||||||||||| Sbjct 50594 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 50561 >seq314 Length=39162 Score = 113 bits (124), Expect = 3e-20 Identities = 163/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | |||||||| ||||| || | || ||||||||| ||||| ||||| Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 38949 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || || || ||||| || |||||||||| || |||||||| | || Sbjct 38948 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 38889 Query 34871 AC-CCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | |||||||||||| | || || |||||| | || | || | |||||| Sbjct 38888 ATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 38829 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || ||||||||||| || |||||||||||| Sbjct 38828 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 38780 >seq98 Length=54307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||||||||| ||||| || || |||| | || Sbjct 35359 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 35418 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || |||||||| | || | ||||||||||| Sbjct 35419 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 35477 >seq94 Length=311871 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||||||||||||||| || ||||| | || Sbjct 106347 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCC 106288 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 106287 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTC 106229 >seq144 Length=22955 Score = 84.2 bits (92), Expect = 1e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 34746 CATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGT 34805 ||||||| || | |||||||| || ||||| | ||| ||||| |||||||| || | Sbjct 218 CATTTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAAT 159 Query 34806 CCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTT 34865 | || |||| | || || || ||||| || |||||||||| || |||||||| Sbjct 158 CTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGG 99 Query 34866 GCGGCACCCCCTCCTTGTC 34884 |||| | ||||||||||| Sbjct 98 GCGGGATGCCCTCCTTGTC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691351175935