Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq314 111 1e-19 seq144 109 5e-19 seq3 102 7e-17 seq94 95.1 1e-14 seq98 84.2 2e-11 >seq314 Length=39162 Score = 111 bits (122), Expect = 1e-19 Identities = 169/236 (72%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || ||||||||||||| ||| | ||| |||||| || |||||||| ||| Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 38949 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC-CGAAGG 35628 | || || |||| || |||||||| ||||| || ||||| ||||||||||| || || Sbjct 38948 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 38889 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687 | | |||||||||| ||||| ||| | |||| | | ||||| || || | Sbjct 38888 ATTCCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGA 38830 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT--TCTGT 35741 |||| | ||||| || || || || | || || || || |||||||| ||||| Sbjct 38829 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGTCTGT 38774 >seq144 Length=22955 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||||||||| || |||||||| || | || | || |||||||||||||||||||| Sbjct 217 ATTTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATC 158 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || |||| || |||||||| ||||| || ||||| ||||||||||| | Sbjct 157 TTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 98 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684 || | || |||||||||| ||||| ||| | |||| | | ||||||| ||| | Sbjct 97 CGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACT 39 Query 35685 CCACCTCCACCGTGATC 35701 | ||||| | |||||| Sbjct 38 CGACCTCGAGGGTGATC 22 >seq3 Length=57953 Score = 102 bits (112), Expect = 7e-17 Identities = 144/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || || |||||||| ||||| || Sbjct 50752 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTT-CCCGCGAA 50694 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||| | || |||||||||| ||||| ||| | | | Sbjct 50693 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 50634 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| || ||||| | ||||| || || || || | || || || Sbjct 50633 GTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 50574 Query 35725 AAATATCTGCAT--TCTGTG 35742 || |||||||| |||||| Sbjct 50573 GAAGATCTGCATGGTCTGTG 50554 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||||||||| || | | | ||||| || | |||| ||| || || ||||||||||| Sbjct 51337 ATTTCCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATC 51278 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | | || || |||| || |||||||| ||||| || ||||| ||||||||||| | Sbjct 51277 TGAAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 51218 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| | | |||||||||| |||||| Sbjct 51217 AGGGATACCCTCCTTGTCCTGGATCTT 51191 >seq94 Length=311871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| |||||||| || ||| | || ||| |||| || Sbjct 106345 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 106286 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || ||||| ||||||||||| | |||| || |||||||||| Sbjct 106285 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 106226 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||||| ||| | |||| | | ||||||| ||| || ||||| | |||||| Sbjct 106225 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 106171 >seq98 Length=54307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | || || |||| || |||||||| || ||||| Sbjct 35379 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 35438 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 35439 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 35497 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || | | |||||| ||| || ||||| | |||||| Sbjct 35498 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 35535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791543254200