Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq74 125 7e-24 seq314 122 9e-23 seq144 122 9e-23 seq94 120 3e-22 seq142 105 7e-18 seq98 100 3e-16 >seq74 Length=129003 Score = 125 bits (138), Expect = 7e-24 Identities = 288/425 (68%), Gaps = 9/425 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| ||||||| ||||| ||||| |||||||| ||||||||| ||| | Sbjct 35091 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATC 35150 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| | | ||||||||||| ||||| || | || | Sbjct 35151 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 35210 Query 7684 GCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| ||| || || | || ||||| || | | || ||| || ||| Sbjct 35211 GCCGGCAC-GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTC 35269 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGC 7800 ||||| ||||| ||| ||||||| | || ||||| || ||| || ||||| ||| Sbjct 35270 GATCGAGGGCATCTACGACACGCT-CAAGACGTGCGCGCTCATCTCC-AAGACGGCAGGC 35327 Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAAC 7860 || || || || | || || | ||||| | |||| ||||| ||| ||| Sbjct 35328 GGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAAC 35387 Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920 || | | | ||| | |||||| | ||||||| ||| ||| ||| ||| | || Sbjct 35388 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 35447 Query 7921 GACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 |||||||| || |||||| ||||| |||||||| | |||||||||||||| Sbjct 35448 GACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 35507 Query 7978 GACAT 7982 ||||| Sbjct 35508 GACAT 35512 >seq314 Length=39162 Score = 122 bits (134), Expect = 9e-23 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560 |||||| || || || || || ||||| || ||||||||||||| | ||| || ||| Sbjct 38994 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 38935 Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTA-TGCCTTCTTTTT 134619 || ||||| ||||| || || ||||| |||||||| ||||| || | | || || || | Sbjct 38934 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTTGT 38875 Query 134620 CTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGG 134679 | ||||| || ||||| ||| | ||||| || || || || ||||| || |||| Sbjct 38874 CCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGG 38815 Query 134680 TTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| | || || ||||| || ||||| Sbjct 38814 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 >seq144 Length=22955 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560 ||| |||||||| || || |||||||||||||||||||| || || ||| | ||| Sbjct 199 CAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTC 140 Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620 || ||||| || || || || ||||| |||||||| |||||||| ||||| || || || Sbjct 139 CTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 80 Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| || ||||| ||| | ||||||||||| || || ||||| || || Sbjct 79 CTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 23 >seq94 Length=311871 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| ||||| || ||||| |||||||| ||||||| Sbjct 106362 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 106303 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 106302 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 106243 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | ||||||||||| || || Sbjct 106242 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 106183 Query 134667 TCGAGAGTAAT 134677 ||||| || || Sbjct 106182 TCGAGGGTGAT 106172 >seq142 Length=61482 Score = 105 bits (116), Expect = 7e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 134507 GAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAG 134566 |||||| ||||| || || || | |||||||||||||| || | | || || ||||| Sbjct 3749 GAGGTGGAGCGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAG 3808 Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 || || ||||| || ||||| |||||||| |||||||| ||||| || || || || | Sbjct 3809 TTGCTTCCCTGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGT 3868 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || ||||| ||| | |||||| ||||| || || ||||| || || Sbjct 3869 CTTGACCTTGACGTCGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 3919 >seq98 Length=54307 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| |||||||||||||| || ||| | ||| ||| Sbjct 35362 ACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCG 35421 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | |||||||| || || || ||||| || || || || Sbjct 35422 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 35481 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || ||||| ||| | ||||| ||||| || || ||||| || || Sbjct 35482 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 35534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396094119800