Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq74 183 4e-41 seq170 96.9 4e-15 seq46 89.7 6e-13 >seq74 Length=129003 Score = 183 bits (202), Expect = 4e-41 Identities = 488/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Minus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||||| |||||| | || | |||||||| |||| || ||| | || | | Sbjct 35818 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 35759 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 |||| | || | || || | ||| ||||| || ||||| | |||||||||| | Sbjct 35758 CAGAGCTTCTGG-GCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 35700 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| | | ||||| || || | |||| ||| || || |||| | |||||||| Sbjct 35699 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 35640 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | || || ||| || |||| |||||||||||| |||||||| || || Sbjct 35639 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 35580 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| | || || ||| | || || | || || || || | || | || Sbjct 35579 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 35520 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186 || | ||| || ||||||||||| || ||||| | |||| | ||| || Sbjct 35519 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 35460 Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 || |||||| || || | ||| ||| ||| | || || ||||| || ||||| || Sbjct 35459 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 35400 Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || | ||| || || || ||| ||||| | | || | || | |||||| Sbjct 35399 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGG--TCGCGCGGATGTTGTGGATC 35342 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | || || || |||||| ||| ||||| |||||||| | |||| || ||||| Sbjct 35341 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 35282 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || ||||||||||| |||| | | || ||||||||| ||| | || || Sbjct 35281 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 35222 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 35221 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 35163 Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 || ||| ||||| | || | |||||| || ||||| || |||| || ||| ||||| Sbjct 35162 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 35103 Query 119543 AAACATGTATTGGGGT 119558 | ||||| || ||| Sbjct 35102 GAGCATGTGCTGCGGT 35087 >seq170 Length=155406 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131 || |||||| |||| || | ||||||||||| || |||||||| || | ||||||| Sbjct 96084 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 96143 Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191 | | | || || || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 96144 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 96203 Query 12192 GTCAGGGAGTTCGTTGAG 12209 ||| | |||||||| ||| Sbjct 96204 GTCCGCGAGTTCGTCGAG 96221 >seq46 Length=135777 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAA 14291 ||| |||| |||||||| || |||||||| | ||| || || || ||| || | Sbjct 482 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 423 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | ||| | || || || | ||||||||||||| || |||||||| || || | || Sbjct 422 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 364 Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | |||| || |||||||||| | ||| || ||| | ||| ||||||||| | Sbjct 363 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 304 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGC 14471 |||| || || || || || | ||| | ||| || || |||||| ||||||| || Sbjct 303 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACCGAGGC 244 Query 14472 CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507 |||| |||| || | || ||||| | |||| Sbjct 243 GCTCGTAGTGTTCGGGGTTCTTGAGGAACTTGACGA 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432378389400