Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq74 349 4e-91 seq222 132 5e-26 seq188 122 1e-22 seq247 107 2e-18 seq170 107 2e-18 seq31 91.5 2e-13 >seq74 Length=129003 Score = 349 bits (386), Expect = 4e-91 Identities = 517/728 (71%), Gaps = 6/728 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250 ||||||||||||| | || |||||||| |||||| | |||| | || ||||||| Sbjct 35101 TCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATCG--AGACGTA 35158 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | ||| | ||||||||||||||| |||| || || |||||||| || || Sbjct 35159 CAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCAC 35218 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| || Sbjct 35219 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 35278 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| ||||||||| ||| || | |||||||||| | | || || ||||| | Sbjct 35279 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCT 35338 Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | | | | | ||| |||| |||| ||| | ||| || ||||||||| | | Sbjct 35339 CTCGATCCAC-AACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGA 35397 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||||||||| | |||||||||||| || |||||| ||||||| | Sbjct 35398 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAGGGAG 35457 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 35458 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 35517 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || || ||| || || | || ||| | ||| || ||| |||| Sbjct 35518 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 35577 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || ||||| || |||||||||||| | || ||| || ||| || ||| || Sbjct 35578 TTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 35637 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | |||||| |||| ||||| ||||| | |||||||| || ||||| || ||| Sbjct 35638 TCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 35697 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 | | | | ||||| |||| ||| |||| | || || | || | | Sbjct 35698 TCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATCCCCGCCCAGAAGCTCT 35757 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || ||||| || |||||| |||||||| | || | |||| |||||||||| Sbjct 35758 GGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGATG 35817 Query 53910 CGGTCAAC 53917 | | |||| Sbjct 35818 CCGCCAAC 35825 Score = 147 bits (162), Expect = 2e-30 Identities = 321/466 (69%), Gaps = 25/466 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTG---GCGCCAATGCCAACCGCGTCGACGGCTCAGATC 55534 ||| | |||||||| ||||||| ||||| ||||| ||||| ||||| |||||| Sbjct 36511 GGCATCCGCAACTC---GCTCGTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATC 36567 Query 55535 ATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTA 55594 | ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 36568 CTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTC 36627 Query 55595 GCAGGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAAC 55651 || || ||||| || | || ||| | | ||| || ||||| | | | Sbjct 36628 GCCGGCGAGTTC--CAGG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGC 36684 Query 55652 AAGTGGAACC-CGCAGATCAAGACG--GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA 55707 ||||||| ||| ||| |||| ||| || | || ||||| || ||||||| Sbjct 36685 CTGTGGAACGACGC-GATGAAGAACACGATCATCGCGCACAACGGC---TCGATCCAGAA 36740 Query 55708 --TCTGGAGATTCCTCTGCGT-CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA 55764 || | ||| | || |||||| || ||| ||| ||||||||||| | || Sbjct 36741 CGTCCCCGGCATCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCA 36800 Query 55765 GAAGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTC 55823 ||| ||| | || ||| | || || || || |||| |||||||||||| ||||| | Sbjct 36801 AAAG-GTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGC 36859 Query 55824 TGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGT 55883 | ||| || | | | || | |||| || | | ||||||||||| ||||| | Sbjct 36860 TCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGAT 36919 Query 55884 GGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGC 55929 ||||||| || ||||||||||| |||||||| || || |||||||| Sbjct 36920 GGAAGAAAGGTCTCAAGACGGGCATGTACTACCTCCGCACCCGCGC 36965 >seq222 Length=17200 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||||||| |||||||| ||| || ||||| || ||||| Sbjct 14579 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 14520 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || ||||| | ||||| ||||||| ||| ||||| ||||| || | || Sbjct 14519 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 14460 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||||||||| || || || |||||||| ||||||| ||||||| |||||| ||| Sbjct 14459 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 14400 Query 152209 G 152209 | Sbjct 14399 G 14399 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| || || |||||||| || ||||||||||||||| || Sbjct 14579 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 14520 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| || ||||| || || | | ||| Sbjct 14519 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 14460 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || ||||| || || || ||||| ||||||| ||||||| | ||||||| Sbjct 14459 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 14400 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 14399 GAAAGCTGGCCGACCT 14384 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCG 119140 |||||| |||||||| ||||| |||||||| ||||| ||| | || ||| |||||| Sbjct 12279 GTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCACCCGTC--GTCTTGGCCTCGTCGTCG 12222 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 12221 TCGTAGTTCGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 12175 >seq188 Length=518690 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| || | ||||||||| |||||||| || || ||||| || ||||| Sbjct 347592 CGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTG 347651 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || ||||| | ||||| ||||||| ||| || || ||||| || | || Sbjct 347652 GCCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCGAC 347711 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || ||||||||||| || || |||||||| ||||||| ||||||| |||||| || Sbjct 347712 GATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCC 347771 Query 152208 CG 152209 || Sbjct 347772 CG 347773 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| || || |||||||| || |||||||||||||| || Sbjct 347593 GTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTGG 347652 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| |||||||| || || | | ||| Sbjct 347653 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCGACG 347712 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || || || || || ||||| ||||||| ||||||| | ||||||| Sbjct 347713 ATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 347772 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 347773 GAAAGCTGGCCGACCT 347788 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 119084 TTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCGT 119141 ||||| |||||||| ||||| ||||| || ||||| ||| | || ||| ||||||| Sbjct 349891 TTGGCGAGCTTGGCGCCGTAGCCGTTTCGTCCACCCGTC--GTCTTGGCCTCGTCGTCGT 349948 Query 119142 TGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 349949 CGTAGTTTGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 349994 >seq247 Length=265135 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCT- 159001 ||||||||||| | ||||||||| || || || | ||| |||| || || | || || Sbjct 180329 AAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTCCGG-CTGGTCTT 180271 Query 159002 GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGG 159061 | || | |||| |||||||| | |||||||| || ||||||| |||||||||||||||| Sbjct 180270 GCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGG 180211 Query 159062 CATCCATGTTCCCGAG 159077 |||| | ||| ||||| Sbjct 180210 CATCGAGGTTGCCGAG 180195 Score = 105 bits (116), Expect = 7e-18 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||||||||| | ||||||||| || ||||| | ||| |||| || || | || Sbjct 15412 CAACAAACTCGCGAACAGGGTGCGTCTCGCCCGTCGCGAGGACATAGTCGTCCGG-CTGG 15470 Query 158999 GCT-GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGC 159057 || | || | |||| |||||||| | |||||||| || ||||||| |||||||||||| Sbjct 15471 TCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGC 15530 Query 159058 TTGGCATCCATGTTCCCGAG 159077 |||||||| | ||| ||||| Sbjct 15531 TTGGCATCGAGGTTGCCGAG 15550 Score = 102 bits (112), Expect = 9e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||||||||| || || | | || | || || Sbjct 180341 CGCCTTCTCGACAAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTC 180282 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 180281 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 180223 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 180222 AGTCGCGCTTGGCATCGAGGTTGCCGAG 180195 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||| | |||||| || | ||||||||| ||||| | | || | || || Sbjct 15404 CGCCTTCTCAACAAACTCGCGAACAGGGTGCGTCTCGCCCGTCGCGAGGACATAGTCGTC 15463 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 15464 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 15522 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 15523 AGTCGCGCTTGGCATCGAGGTTGCCGAG 15550 >seq170 Length=155406 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||||| | ||| ||||| || ||||| | |||||||| || || | ||| Sbjct 96214 AACTCGCGGACGGGGTGGGTCTCGCCGGTCGCGAGGACAAAGTCGTCGGGCTGGTCCTGC 96155 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 ||||||||| |||||||| ||||||| || || | ||||| |||||||||||||| || Sbjct 96154 TGGAGCATGCGCCACATGCCCTCGACATAGTCGCGAGCGTGTCCCCAGTCGCGCTTCGCG 96095 Query 159064 TCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 96094 TCGAGGTTACCGAG 96081 >seq31 Length=506143 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 75071 CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTC 75130 |||| | |||||||| | |||||||| |||||||| || ||| || || || | Sbjct 247418 CTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTCCAC 247477 Query 75131 GATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAA 75190 | ||||| |||||||||||||||| |||||||| || || || || ||| || Sbjct 247478 CAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGATGAA 247537 Query 75191 GTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 ||| ||||| | ||| || ||| |||||| ||| ||||||| Sbjct 247538 GTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCC 247580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213503327000