Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 172 6e-38 seq222 165 9e-36 seq188 165 9e-36 seq314 154 2e-32 seq361 125 8e-24 seq111 125 8e-24 seq94 116 4e-21 seq144 100 3e-16 seq98 98.7 1e-15 seq74 86.0 7e-12 >seq3 Length=57953 Score = 172 bits (190), Expect = 6e-38 Identities = 175/227 (77%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||||| Sbjct 50562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 50621 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 50622 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 50681 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| |||||| || | || || || Sbjct 50682 CAGCGCTTGATCTTCGC-GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 50740 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || ||||||| ||||| || Sbjct 50741 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGG 50787 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 |||||||| || |||||||||||||| || ||||| ||||||||||| | || || || Sbjct 51185 AAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCG 51244 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||| | || || || |||| || || |||| || || || || Sbjct 51245 GGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACG 51304 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || || | ||||||||||||||| Sbjct 51305 CTGCACCTGGTGCTTCGTCTTCGCGGTGGA 51334 >seq222 Length=17200 Score = 165 bits (182), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || | Sbjct 14384 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 14443 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 ||||||||||||| || ||| ||| || |||||||| ||||| || ||| | ||| Sbjct 14444 CGCTCCAGGGCACGATCGTCGGCCTCGCGCAGAACTTCGTCGGCAGCAACAACATCAACG 14503 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || || ||||| || || || || || |||||||| || || ||| Sbjct 14504 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTTCAAGGCGGCAAGGACGCGGCCAGCG 14563 Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 |||||||||||||||| |||| |||| | ||||||| | | ||| |||||||||| Sbjct 14564 CCCGTTACATCTTCACAAACGTCGCGCAGAT--CACGCGCACGCTCTTCCACCCGTCGGA 14621 Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||| || | ||| | ||| |||||||| ||| | |||||||| Sbjct 14622 CGACGCCATCCTCGACTACCTCAACGATGACGGGCAGAGCATCGAGCCG 14670 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420 |||| |||||||| ||||| ||||| |||| | || ||| |||||| ||||||| Sbjct 12169 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCGAACTACGACGACGAC 12228 Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471 ||| || || ||||||||||| || |||||||| || |||||||||||| Sbjct 12229 GAGGCCAAGACG--ACGGGTGGACGGAACGGCTACGGCGCCAAGCTCGCCAAC 12279 >seq188 Length=518690 Score = 165 bits (182), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || | Sbjct 347788 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 347729 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 |||| ||||||||||| ||| ||| || |||||||||||||| || ||| | ||| Sbjct 347728 CGCTGCAGGGCACCATCGTCGGCCTCGCGCAGAACTTTGTCGGCAGCAACAACATCAACG 347669 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || || ||||| || || || ||| || |||||||| || || ||| Sbjct 347668 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTCCAGGGCGGCAAGGACGCGGCCAGCG 347609 Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 | |||||||||||||| ||| |||| | ||||||| | | ||| |||| ||||| Sbjct 347608 CTCGTTACATCTTCACGAACGTGGCGCAGAT--CACGCGCACGCTCTTCCACCCCTCGGA 347551 Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||| ||| | ||| | ||| | || ||||| ||| | |||||||| Sbjct 347550 CGACGCGATCCTCGACTACCTTAACGACGACGGCCAGAGCATCGAGCCG 347502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420 |||| |||||||| ||||| ||||| |||| | || ||| |||||| ||||||| Sbjct 350000 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCAAACTACGACGACGAC 349941 Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAA 30470 ||| || || |||||||||||||| |||||||| || ||||||||||| Sbjct 349940 GAGGCCAAGACG--ACGGGTGGACGAAACGGCTACGGCGCCAAGCTCGCCAA 349891 >seq314 Length=39162 Score = 154 bits (170), Expect = 2e-32 Identities = 174/229 (76%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 38781 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 38840 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGA-GGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || |||||||||||||| |||||| ||||| ||||| Sbjct 38841 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCA 38900 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 |||||| | || || || || ||||| || ||||| | ||| || || ||| ||||| | Sbjct 38901 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGC-GACTACA 38959 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| || || || ||||| || ||| | | |||||||| Sbjct 38960 ACATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 39008 >seq361 Length=17270 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || ||||||||||||||||| ||||| |||||||||||||| || || || Sbjct 9284 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 9225 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||||| |||||| || | || || || |||| || || || || Sbjct 9224 GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 9165 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 9164 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 9136 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || ||||||||||||||||| ||||| |||||||||||||| || || || Sbjct 8844 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 8785 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 8784 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 8725 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 8724 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 8696 >seq111 Length=69946 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || ||||| ||||||||||| || || || || Sbjct 54228 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCG 54287 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| || || || | |||||| || || |||| ||| || || Sbjct 54288 GGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACC 54347 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||| || ||||| || Sbjct 54348 CTTCATCTCGTCTTGCGCCTACGCGGCGG 54376 >seq94 Length=311871 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || ||||| |||||||||||||| || || || Sbjct 105904 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCG 105963 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 105964 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 106023 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 106024 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 106052 Score = 105 bits (116), Expect = 8e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| ||||| || ||||||||||| | || || || Sbjct 106214 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 106273 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||| | || || || ||| |||||||| | || ||||| || || Sbjct 106274 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 106332 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||||| |||||||| Sbjct 106333 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 106362 >seq144 Length=22955 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||||||||||||||| || || || ||||||||||| | || || || Sbjct 65 AAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCG 124 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||| | || || || ||| || || | ||||||||||| || Sbjct 125 GGGAAGCAGCTTGAGGACGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACC 184 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || || ||| | | ||||||||| Sbjct 185 CTGCACCTCGTTTTGAGGTTGCGCGGTGGA 214 >seq98 Length=54307 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| || || ||||| Sbjct 35492 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCC 35433 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || | ||||| || | || ||||| || || Sbjct 35432 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACC 35373 Query 27604 CTTCATCTAGTC 27615 ||||| || ||| Sbjct 35372 CTTCACCTCGTC 35361 >seq74 Length=129003 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || || || || || |||||||||||||||||||| || |||||||| ||||| | |||| Sbjct 36965 GCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGC 36906 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || || | | | || ||| || ||||| ||||| Sbjct 36905 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 36846 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||| || || || || || || | || || | |||||| | || ||||| Sbjct 36845 TCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCAC 36786 Query 80212 ACTGT 80216 || || Sbjct 36785 ACGGT 36781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753 |||||||| || || | |||||| |||| || || ||||| || ||||| |||| Sbjct 36264 GTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGAT 36205 Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813 |||||||||||| ||| |||||||||||| | ||||| |||| ||||| Sbjct 36204 CGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGAT 36145 Query 80814 GACGCGGTTCAGGTTG 80829 || ||||||||||||| Sbjct 36144 GATGCGGTTCAGGTTG 36129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307797958800