Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq361 116 9e-21 seq3 116 9e-21 seq94 107 5e-18 seq144 95.1 3e-14 seq314 93.3 1e-13 seq142 87.8 4e-12 >seq361 Length=17270 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| || || ||||| |||| |||||||| | | ||| Sbjct 9142 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 9201 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||||||||| ||||||||||| || || |||||||| || || || Sbjct 9202 CGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCC 9261 Query 225613 TCCTTGTCTTGGATCTT 225629 |||||||| |||||||| Sbjct 9262 TCCTTGTCCTGGATCTT 9278 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| || || ||||| |||| |||||||| | | ||| Sbjct 8702 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 8761 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||||||||| ||||||||||| || || |||||||| || || || Sbjct 8762 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCC 8821 Query 225613 TCCTTGTCTTGGATCTT 225629 |||||||| |||||||| Sbjct 8822 TCCTTGTCCTGGATCTT 8838 >seq3 Length=57953 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| |||||||| | | ||| Sbjct 50781 CGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTA 50722 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||||||||| |||||||| | || || |||||||| || || || Sbjct 50721 CGACCATCCTCGAGCTGCTTCCC-GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCC 50663 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| ||| ||||| ||||| || | || || || | Sbjct 50662 TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGG 50603 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 50602 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 50562 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || || ||||| |||| |||||||| | | || Sbjct 51327 CGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTG 51268 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 51267 CGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCC 51208 Query 225613 TCCTTGTCTTGGATCTT 225629 |||||||| |||||||| Sbjct 51207 TCCTTGTCCTGGATCTT 51191 >seq94 Length=311871 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| || || ||||| |||| |||||||| | | ||| Sbjct 106046 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 105987 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||||||||| |||||||| || || || |||||||| || || || Sbjct 105986 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 105927 Query 225613 TCCTTGTCTTGGATCTT 225629 |||||||| |||||||| Sbjct 105926 TCCTTGTCCTGGATCTT 105910 >seq144 Length=22955 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| || ||||| || || ||||| ||||| | |||||||| | || | || Sbjct 201 CTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCG 142 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || ||||||||||| |||||||| | || || ||||||||||| || || |||||| Sbjct 141 TCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 82 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || || ||||| ||| || ||||| ||||| || | || || || | |||||| Sbjct 81 TCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 22 >seq314 Length=39162 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| || || ||||| || || || || |||| ||||| ||| | || | || Sbjct 38996 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 38937 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT-TCCTT 225617 || || |||||||| || |||||||| | || || |||||||| || || || ||||| Sbjct 38936 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCCTCCTT 38877 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || ||||| ||| || ||||||||||| || | || || || | ||||| Sbjct 38876 GTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 38817 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || | || || | ||| | ||||| Sbjct 38816 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781 >seq142 Length=61482 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||| || || || || | || ||||| ||| | | | | |||||| || Sbjct 3750 AGGTGGAGCGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGT 3809 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 |||||||| |||||||| | || || ||||||||||| || || |||||||| ||| || Sbjct 3810 TGCTTCCCTGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTC 3869 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || ||| || | | ||| ||||| || | || || || | ||||||| Sbjct 3870 TTGACCTTGACGTCGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 3920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525623053310