Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq314 147 5e-30
seq94 140 7e-28
seq98 138 2e-27
seq3 138 2e-27
seq144 125 1e-23
seq142 96.9 7e-15
seq111 95.1 3e-14
seq361 93.3 9e-14
seq222 89.7 1e-12
seq66 84.2 5e-11
>seq314
Length=39162
Score = 147 bits (162), Expect = 5e-30
Identities = 170/228 (75%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||| | | |||||||| | || || || ||||||||||||||
Sbjct 39008 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 38949
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| || ||||| || || || || || |||||||| || || ||||| ||
Sbjct 38948 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 38889
Query 282993 ATACCC-TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||| |||||||| || ||||| || || ||| | ||||| |||||||||| |||||
Sbjct 38888 ATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 38829
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 38828 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 38781
>seq94
Length=311871
Score = 140 bits (154), Expect = 7e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| ||||| || | ||| || || || ||||| |||||
Sbjct 106362 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 106303
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| || ||||| || || || ||||| |||||||| || || |||||| ||||
Sbjct 106302 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 106243
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| || || ||| | ||||| ||||| || | |||||
Sbjct 106242 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 106183
Query 283053 TCGAGAGTGATC 283064
||||| ||||||
Sbjct 106182 TCGAGGGTGATC 106171
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| ||||||||||| || | ||| || || || ||||| || || ||||| || |||
Sbjct 106016 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 105957
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| | ||| || ||||| || || ||||||||||| |||||||| || || ||
Sbjct 105956 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAAC 105901
>seq98
Length=54307
Score = 138 bits (152), Expect = 2e-27
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || ||||||||||||| ||| |||||||| ||||| || || || |||||||||
Sbjct 35380 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 35439
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | || || |||||| || || ||||||||||| |||||||| || || ||| |
Sbjct 35440 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 35499
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| |||||||| | ||||| ||||| ||||||
Sbjct 35500 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 35535
>seq3
Length=57953
Score = 138 bits (152), Expect = 2e-27
Identities = 146/191 (76%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || ||||||||||| || | ||| || || |||||||| || || |||||| | |||
Sbjct 50751 TCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCG-CGAAG 50693
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| || || ||||||||||| || ||||| || || || |
Sbjct 50692 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 50633
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| |||||||| | || || ||||| ||||| ||||| || || | ||||| |||
Sbjct 50632 TCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 50573
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 50572 AAGATCTGCAT 50562
Score = 123 bits (136), Expect = 5e-23
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| ||||| || | ||| ||||| ||||||||||| || | |
Sbjct 51333 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 51274
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| || ||||| || || ||||| || |||||||| || || ||||| ||
Sbjct 51273 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 51214
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTA-CGGTATCG 283031
|||||||||||||| |||||||| || || | | ||||||
Sbjct 51213 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACCTGTATCG 51174
>seq144
Length=22955
Score = 125 bits (138), Expect = 1e-23
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| ||||| |||||||| || ||||||||| || ||||| || || ||||| || ||
Sbjct 178 TTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAA 119
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
|||||| || || ||||| ||| || ||||||||||| || ||||| || || ||| |
Sbjct 118 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 59
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| ||||| || | ||||| ||||| ||||||
Sbjct 58 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 22
>seq142
Length=61482
Score = 96.9 bits (106), Expect = 7e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || | |||||||||||| | | | ||| ||| || ||||| ||||| || |||
Sbjct 3765 TCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAAG 3824
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| ||| || ||||||||||| ||| |||| | || |||
Sbjct 3825 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGACGTCG 3884
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
| ||| |||||||| | ||||| ||||| ||||||
Sbjct 3885 TAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 3920
>seq111
Length=69946
Score = 95.1 bits (104), Expect = 3e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 282913 TTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972
|||| | |||||||| | |||||||||| ||||| || || ||||| || || || |
Sbjct 54336 TTTGAACCTTGTAGTCTTCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGA 54277
Query 282973 AACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGA 283032
|| || ||||| || || ||||||||||| |||||||| || || ||| | ||||
Sbjct 54276 GCCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGATGTCGA 54217
Query 283033 TAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
| ||| || | | ||| ||||||||||||
Sbjct 54216 TCGTGCTGGAGGACTTGACATCGAGAGTGATC 54185
>seq361
Length=17270
Score = 93.3 bits (102), Expect = 9e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| ||||||||||| || | ||| || || |||||||| || || ||||| || |||
Sbjct 9172 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 9231
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| | ||| || ||||| || || ||||||||||| |||||||| || || ||
Sbjct 9232 ATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC 9287
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| ||||||||||| || | ||| || || || ||||| || || ||||| || |||
Sbjct 8732 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 8791
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| | ||| || ||||| || || ||||||||||| |||||||| || || ||
Sbjct 8792 ATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC 8847
>seq222
Length=17200
Score = 89.7 bits (98), Expect = 1e-12
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836
|| ||||| ||||| | ||| || || ||||||||| ||||| || | || ||| |||
Sbjct 14582 TTTGTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAAC 14523
Query 273837 TGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895
|| || | |||| | ||| ||| ||||||||||| |||||| | | ||| || |
Sbjct 14522 TGGCCGTTCGGGTCG-AGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCC 14464
Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955
||||| || ||||| || || | ||||||||||| || || ||| || | ||| ||
Sbjct 14463 GACGATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTA 14404
Query 273956 ACC 273958
||
Sbjct 14403 GCC 14401
>seq66
Length=56660
Score = 84.2 bits (92), Expect = 5e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 315704 CACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTT 315763
||||||| |||||||||| ||||||||||||||| || || |||| ||| |||||||
Sbjct 50432 CACCGAGCGCATCGCGGTCCAAAAAGTTGGTCGGCTCGTCGAGGACGAGGACCTGGGGTT 50491
Query 315764 GTTGCCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGA 315823
||| | |||||| |||| |||| ||| | || || || || |||| ||||| |
Sbjct 50492 TGGACCACATGGCGGCGGCGATGACGACCTTGACCTTCTGTCCGCCCGACAAACCACGCA 50551
Query 315824 T 315824
|
Sbjct 50552 T 50552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046734304858710
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